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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C02724.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 610aa MW: 67025.4 Da PI: 7.4871 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C02724.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 68 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g WTteEde l +av g++Wk+Ia+ ++ Rt+ qc +rwqk+
Pahal.C02724.1 68 KGGWTTEEDETLQKAVDACNGKNWKKIAESFP-DRTAVQCLHRWQKV 113
688*****************************.************96 PP
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2 | Myb_DNA-binding | 60.2 | 4.4e-19 | 120 | 166 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+++++ vk++G + W++Iar ++ gR +kqc++rw+++l
Pahal.C02724.1 120 KGPWTQEEDDIIINMVKKYGAKKWSLIARSLN-GRIGKQCRERWHNHL 166
79******************************.*************97 PP
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3 | Myb_DNA-binding | 55.4 | 1.4e-17 | 172 | 215 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+++WT eE+ +da++++G++ W+ Ia+ ++ gRt++++k++w++
Pahal.C02724.1 172 KDAWTVEEERVVADAHRLHGNK-WAEIAKLLP-GRTDNSIKNHWNS 215
679*******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 610 aa
Download sequence Send
to blast |
MGAMAAVKVE EHEGSAGKWW NLAASSPSTS VSEAGSYGGG ARMSSVVSSP ADSVSGRRRT 60 SGPVRRAKGG WTTEEDETLQ KAVDACNGKN WKKIAESFPD RTAVQCLHRW QKVINPELVK 120 GPWTQEEDDI IINMVKKYGA KKWSLIARSL NGRIGKQCRE RWHNHLDPQI NKDAWTVEEE 180 RVVADAHRLH GNKWAEIAKL LPGRTDNSIK NHWNSSLRKR LGDYNASSPL PVSVHMVRNS 240 LKHEKAKLTN GNHIDLNKEP NINLKHPPEI ADHSEHTTDL RACSLKNIKS CSDFLSLVIP 300 TAQPETHGAL EEGDYSDVAL AAIQGLKMDS IHDKGTEINF VCKERSKIDS LNVEVLKLDH 360 VTDTMGYSGS AKVEGKTVNN VCTLSLPNES NSFGSLCYKI PKLEDVVPSH SPVFSTHHVQ 420 QCWGDGFQSP VGYTTSPGVE DIYQLSAESI LKSAAENFPG TPSILRRRKR ETAAHAEDSN 480 FKIDILNSDS YHTPLGKCTA ESPHSFKTAT FLSLGPPSNE GLSAALGSFD VSPPNRLRSK 540 RMAILRVVEK KHLDFSLDGM DNFDTPDTTK KTSSCTECTN SCTDVSSEHM VGLEILAKDF 600 ARTTKLDVI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |