PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02101.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 313aa    MW: 33727.4 Da    PI: 4.9585
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02101.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
   Pahal.C02101.1 15 KGLWSPEEDEKLYNHIIRHGVGCWSSVPKLAGLQRCGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding51.32.6e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++l++ +++ lG++ W+ Ia++++ gRt++++k++w++ 
   Pahal.C02101.1  68 RGSFSQQEEDLILALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 112
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6221062IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-231065IPR009057Homeodomain-like
SuperFamilySSF466894.4E-2912109IPR009057Homeodomain-like
SMARTSM007172.3E-121464IPR001005SANT/Myb domain
PfamPF002499.7E-151562IPR001005SANT/Myb domain
CDDcd001679.29E-121862No hitNo description
PROSITE profilePS5129425.94463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2666117IPR009057Homeodomain-like
SMARTSM007172.2E-1667115IPR001005SANT/Myb domain
PfamPF002497.5E-1568112IPR001005SANT/Myb domain
CDDcd001676.01E-1270110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRLSCGGVQ PKLRKGLWSP EEDEKLYNHI IRHGVGCWSS VPKLAGLQRC GKSCRLRWIN  60
YLRPDLKRGS FSQQEEDLIL ALHEILGNRW SQIASHLPGR TDNEIKNFWN SCLKKKLRQR  120
GIDPSTHKPI ANAGAAEAGA ALPDARDPGH KPAAGDSDDG LAQKQPAVFD PFPLADLGFD  180
LGAASVAALY CGPYDDGVGK APPDAGGFVA DYSSVLDVSE NLGYGESSSN SSNWTCAEMS  240
SAVLDSEVLH WASGGGAKPE PYTELEQQQQ HSGGYGGGEQ AVDDDDALEH KFSLPCGQEQ  300
SLAHFDFNLE YF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28111173108B-MYB
1h8a_C2e-28911721128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635970.0BT063597.1 Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807707.10.0myb-related protein Hv33-like
SwissprotP200271e-120MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A2S3HA030.0A0A2S3HA03_9POAL; Uncharacterized protein
STRINGPavir.J19191.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-75myb domain protein 86