PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02030.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 271aa    MW: 28690.4 Da    PI: 8.0319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde+l  +v+++G g +W + +++ g++R++k+c++rw++yl
   Pahal.C02030.1 14 RGPWSPEEDEQLRSYVQRHGIGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                     89******************999************************97 PP
2Myb_DNA-binding37.55.4e-1271111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       T++Ed+ ++ +    G++ W+ Ia++++ gRt++++k++w++
   Pahal.C02030.1  71 YTEQEDQVILSLYSSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                      69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.914966IPR017930Myb domain
SuperFamilySSF466892.17E-2811109IPR009057Homeodomain-like
SMARTSM007176.3E-121364IPR001005SANT/Myb domain
PfamPF002498.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-241569IPR009057Homeodomain-like
CDDcd001671.37E-91662No hitNo description
PROSITE profilePS5129415.35567117IPR017930Myb domain
SMARTSM007172.3E-1167115IPR001005SANT/Myb domain
PfamPF002499.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2270116IPR009057Homeodomain-like
CDDcd001671.36E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDEQLRSYVQ RHGIGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDQVIL SLYSSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAVAG  120
ATGGAFAAPA TPPPAAALSP ASSSVTSSSG DARFAAYPPP PQAQQHQGLI RFDAPRTTEL  180
APVPPVAQLG AAVWAPCAAA SGAVAALDDD VFLPDLVTGG GEQLFPYGDF YAGLQDRALE  240
LSACYFPNMA EMWGAAASDA KPQGLCNTLT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794301e-168HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808022.10.0transcription factor RAX2-like
TrEMBLA0A2S3H9X30.0A0A2S3H9X3_9POAL; Uncharacterized protein
STRINGPavir.J11789.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-65myb domain protein 36