PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01944.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 266aa    MW: 28678.1 Da    PI: 7.9361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01944.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19112163256
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+++AeIrd  +   k +r++lg+f taeeAa a+++a+++++g+
  Pahal.C01944.1 112 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFTTAEEAALAYDKAALRMRGP 163
                     69*******.**********332...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-28111170No hitNo description
Gene3DG3DSA:3.30.730.101.2E-31112170IPR001471AP2/ERF domain
SMARTSM003802.7E-36112176IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23112172IPR016177DNA-binding domain
PfamPF008471.5E-14112162IPR001471AP2/ERF domain
PROSITE profilePS5103223.565112170IPR001471AP2/ERF domain
PRINTSPR003679.1E-11113124IPR001471AP2/ERF domain
PRINTSPR003679.1E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAIGAPGSHQ PNNEAANILE NVWATIMTES ATPASSTAAS SEVGEEKPEA ILQRLPSLGR  60
WISMGAEEWD ELLLGGTALT SDASGELLVA SPASQEDRRD RRASSKAVAC KSYRGVRRRP  120
WGKFAAEIRD TRRKGARVWL GTFTTAEEAA LAYDKAALRM RGPRAHLNFP LDVVQRELAG  180
NGCVEASRVL RRRRRRGNNA AAVDTRSNGS VSATGGCDQT MVSFACGKKD QGTSMVQERS  240
MSDPGAVIEF EDIGGEYWDY LFAPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-28111173466ATERF1
3gcc_A9e-28111173466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187195RVLRRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU6854121e-145KU685412.1 Saccharum spontaneum clone SES23E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806647.10.0ethylene-responsive transcription factor 15-like
TrEMBLA0A2S3H9P90.0A0A2S3H9P9_9POAL; Uncharacterized protein
STRINGPavir.J34156.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-21ethylene responsive element binding factor 2