PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01091.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 289aa    MW: 31839.2 Da    PI: 6.3703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01091.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-163178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv+ v+++G ++W+  a+  g++Rt+k+c++rw +yl
   Pahal.C01091.1 31 KGPWTEEEDAQLVRFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 78
                     79********************************************97 PP
2Myb_DNA-binding51.32.7e-1684127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rgr T++E+ l+v++++q+G++ W++Iar ++ gRt++++k++w++
   Pahal.C01091.1  84 RGRITADEERLIVQLHAQWGSR-WSRIARSVP-GRTDNEIKNFWRT 127
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.5832682IPR017930Myb domain
SuperFamilySSF466893.63E-2829125IPR009057Homeodomain-like
SMARTSM007171.7E-153080IPR001005SANT/Myb domain
PfamPF002494.3E-153178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-213285IPR009057Homeodomain-like
CDDcd001671.70E-113378No hitNo description
SMARTSM007171.3E-1383131IPR001005SANT/Myb domain
PROSITE profilePS5129418.03983133IPR017930Myb domain
PfamPF002496.6E-1484127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2286132IPR009057Homeodomain-like
CDDcd001676.14E-1088127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSMFSRNKKP DGEQISRGGG TMAAPVPAMR KGPWTEEEDA QLVRFVRLFG ERRWDFLAKV  60
SGLRRTGKSC RLRWVNYLHP DLRRGRITAD EERLIVQLHA QWGSRWSRIA RSVPGRTDNE  120
IKNFWRTRTR KKALEERRHN SGSSSNKKAA AASPLSSVTT ASCCPGSPNS GAATSSSSAP  180
PSDDSSLREG SGGDDAELEE ASTATAAATQ HEEPQEYCCA MDQLWNEIAA ADAAASYALD  240
GWGAGHCYYV AAAEALAMPS SPVWEYSSDY SLWRIDDEEY YREMLDAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-272713354159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-272713354159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283601e-138KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806457.11e-135LOW QUALITY PROTEIN: transcription factor MYB59-like
TrEMBLA0A2S3H7D90.0A0A2S3H7D9_9POAL; Uncharacterized protein
STRINGPavir.J36591.1.p1e-160(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.39e-58myb domain protein 59