 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C01091.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 289aa MW: 31839.2 Da PI: 6.3703 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C01091.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lv+ v+++G ++W+ a+ g++Rt+k+c++rw +yl
Pahal.C01091.1 31 KGPWTEEEDAQLVRFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 78
79********************************************97 PP
|
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rgr T++E+ l+v++++q+G++ W++Iar ++ gRt++++k++w++
Pahal.C01091.1 84 RGRITADEERLIVQLHAQWGSR-WSRIARSVP-GRTDNEIKNFWRT 127
899*******************.*********.***********96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MSMFSRNKKP DGEQISRGGG TMAAPVPAMR KGPWTEEEDA QLVRFVRLFG ERRWDFLAKV 60 SGLRRTGKSC RLRWVNYLHP DLRRGRITAD EERLIVQLHA QWGSRWSRIA RSVPGRTDNE 120 IKNFWRTRTR KKALEERRHN SGSSSNKKAA AASPLSSVTT ASCCPGSPNS GAATSSSSAP 180 PSDDSSLREG SGGDDAELEE ASTATAAATQ HEEPQEYCCA MDQLWNEIAA ADAAASYALD 240 GWGAGHCYYV AAAEALAMPS SPVWEYSSDY SLWRIDDEEY YREMLDAS*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728360 | 1e-138 | KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds. |