PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01089.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 303aa    MW: 33361.7 Da    PI: 7.1973
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01089.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-154592148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
   Pahal.C01089.1 45 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 92
                     79********************************************97 PP
2Myb_DNA-binding54.52.7e-1798141146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++
   Pahal.C01089.1  98 RGRITPDEERLILELHTQYGSK-WSRIARSLP-GRTDNEIKNYWRT 141
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3564092IPR017930Myb domain
SuperFamilySSF466893.06E-2942139IPR009057Homeodomain-like
SMARTSM007173.1E-134494IPR001005SANT/Myb domain
PfamPF002491.5E-134592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-204699IPR009057Homeodomain-like
CDDcd001672.92E-104792No hitNo description
PROSITE profilePS5129423.26893147IPR017930Myb domain
SMARTSM007174.2E-1497145IPR001005SANT/Myb domain
PfamPF002492.6E-1498141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-23100145IPR009057Homeodomain-like
CDDcd001674.88E-11102141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDHHRSMAAA AMSMFSRNKQ KKDGERSSSS GNQETAAAVP PGMRKGPWTE EEDAQLVWFV  60
RLFGERRWDF LAKVSGLRRT GKSCRLRWVN YLHPGLRRGR ITPDEERLIL ELHTQYGSKW  120
SRIARSLPGR TDNEIKNYWR TRTRKQKAAS QAKAAASASA SASSSSTVTT TASCYGSPSS  180
GSGRLTAASS SAVNESALRE SGGGDDEDDA ELDEASTTAA SQHRHQQQQQ QESSYTMDQF  240
WNEIAAADAA ASYMMVDGWG GAGHPAAAEP PVPSSPVWEY CSDYSLWRID DEEYYKKMLD  300
AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26411463107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283601e-100KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806767.11e-166transcription factor MYB48-like
TrEMBLA0A2S3H7I20.0A0A2S3H7I2_9POAL; Uncharacterized protein
STRINGPavir.Ca00653.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.13e-57myb domain protein 48