PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 669aa MW: 71327.7 Da PI: 6.3285 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 417.6 | 1.1e-127 | 301 | 661 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfsh 95 +lLl+cAe v++++l a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lpp + + + + +++aa+++f+ +sP++kfsh Pahal.C00024.1 301 LTLLLQCAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPASPAAARlHGRVAAAFQVFNGISPFVKFSH 395 579************************************************************77666655548899999*************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+ s e+le+tg+rL++fA++lg+pfef + va++ +++ Pahal.C00024.1 396 FTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCA-VAEKAGNVD 485 ******************************************************....***************************.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L v ++Ea+aV++ + h+l+d ++s ++ +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++v Pahal.C00024.1 486 PEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVV 573 *****************9..999999999999....**********************.899********************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E++ll+rei+nv+a g +r+ + + +++Wre+l ++GF++++l +aa+qa+lll +++sdgy++ ee+g+l lgWkd L+++SaWr Pahal.C00024.1 574 EQQLLSREICNVLAVGGPARTGDVK-FGSWREKLAQSGFRSASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 661 *******************999987.**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.631 | 274 | 641 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.7E-125 | 301 | 661 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0051457 | Biological Process | maintenance of protein location in nucleus | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MGSSSLLLFP SSSSAAPPTA SPHPAYSHAT ASTSSHSLLP PLPFSQDHLL LQYLHHLDQQ 60 QESAAMVRKR PAPDMDLPPP RRHVTGDLSD VTAAAGGGQP HQSPASAQLP ALPTQLQLPA 120 FQQQQQHGHA EVDVPHAPPP AAAEVAASTT AWVDGIIRDI IGSSGGAGVS ITQLIHNVRE 180 IIHPCNPGLA SLLELRLRSL LNADPALPPL PHPAALLHNT PPAAAPTVPA LPPPPLPDKR 240 RHEPQPCQQE EPNPSPQSPK PPTAEETAAA AAAAAAAAAA AKERKEEQRR KQRDEEGLHL 300 LTLLLQCAES VNADNLDDAH QTLLEIAELA TPFGTSTQRV AAYFAEAMSA RLVSSCLGLY 360 APLPPASPAA ARLHGRVAAA FQVFNGISPF VKFSHFTANQ AIQEAFEREE RVHIIDLDIM 420 QGLQWPGLFH ILASRPGGPP RVRLTGLGAS MEALEATGKR LSDFADTLGL PFEFCAVAEK 480 AGNVDPEKLG VTRREAVAVH WLHHSLYDVT GSDSNTLWLI QRLAPKVVTM VEQDLSHSGS 540 FLARFVEAIH YYSALFDSLD ASYGEDSPER HVVEQQLLSR EICNVLAVGG PARTGDVKFG 600 SWREKLAQSG FRSASLAGSA AAQASLLLGM FPSDGYTLVE ENGALKLGWK DLCLLTASAW 660 RPIQTPCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 0.0 | 284 | 662 | 3 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}. | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063682 | 0.0 | BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807416.1 | 0.0 | protein SCARECROW-like | ||||
Swissprot | A2ZHL0 | 0.0 | SCR2_ORYSI; Protein SCARECROW 2 | ||||
Swissprot | Q2QYF3 | 0.0 | SCR2_ORYSJ; Protein SCARECROW 2 | ||||
TrEMBL | A0A2T7E4L0 | 0.0 | A0A2T7E4L0_9POAL; Uncharacterized protein | ||||
STRING | ORUFI12G01460.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS12T0122000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00024.1 |