 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.B04556.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 360aa MW: 38223.3 Da PI: 7.1754 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B04556.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl
Pahal.B04556.1 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
788*******************************************97 PP
|
| 2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++++eE++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++y
Pahal.B04556.1 67 RGAFSQEEEDLIIHLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 111
89********************.*********.************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MARRTSGPKK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY 60
LRPDLKRGAF SQEEEDLIIH LHSMLGNKWS QIAAQLPGRT DNEVKNFWNS YVKKKLRQRG 120
IDPATHKPLA EASSGRRGAA AASRTAVFSD AELILSSSAG QQHMPPPPVT KAESYVYSRS 180
ISADGGASDG SLQSLSGYNQ AGDFAAAAYL QDPDALQPCG PSGVPAVVLP SASSSSTLNS 240
MGGLSPAATT TTTGTDEQCN NNSSSGGNWS FELSTQQSCS ASHLPWLELG TSGYANGTAA 300
AAVDHYGAAL DELKWSDYVF DGYGGGGQYQ PQGQCIYGDS KDAVQFADAS GLGSSWCLN*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT034016 | 1e-170 | BT034016.1 Zea mays full-length cDNA clone ZM_BFc0036C19 mRNA, complete cds. |
| GenBank | BT035399 | 1e-170 | BT035399.1 Zea mays full-length cDNA clone ZM_BFb0059D04 mRNA, complete cds. |
| GenBank | BT040989 | 1e-170 | BT040989.1 Zea mays full-length cDNA clone ZM_BFc0162L22 mRNA, complete cds. |
| GenBank | BT067525 | 1e-170 | BT067525.1 Zea mays full-length cDNA clone ZM_BFc0072I17 mRNA, complete cds. |
| GenBank | KJ727614 | 1e-170 | KJ727614.1 Zea mays clone pUT5525 MYB transcription factor (MYB23) mRNA, partial cds. |
