PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03216.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 525aa    MW: 55876 Da    PI: 8.0733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03216.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.2e-17242291255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pahal.B03216.1 242 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 291
                     899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.7E-24237312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-19239315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.799240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-16242295No hitNo description
PfamPF000104.5E-15242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13246296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MGIQGNKAAT HEHDFLSLYT ATTAAANKDS PLQLHDSKPL PPSQGSSFFL KTHDFLQPLE  60
KPGAPPPEPS PSLPAATSGA ESRHRHQPVT AAAAEQHALP PPGGVGTFSI CPAPVSVAPP  120
ASAAVVKAEP PLVLWGQPAA ALLPAARGHQ LQWALPFAGA GQARQPPPQQ HQAPPDRKGR  180
GGGGGVMESG SRSSGGAGFD DDDGLAARRE VSSSLKELTV RVDRKGGSCS DGGTDQRPNT  240
TRSKHSATEQ RRRSKINDRF QILRELLPHN DQKRDKATFL LEVIEYIRFL QEKVQKYEAT  300
FPEWNQENAK LLPWSNMYFR SFWKNAQSKG QIPGDSLPDP SHFMRNGSSP GSNFTGKLDD  360
NHNMVTSAAA SGAQDQTETD RMASLCYRST ETPANITNNV LSQSQPQWTG PSPVDDCAVN  420
SQMLNNQQLA IDEGTISVSS QYSQELLNSL THALQSSGVD LSQASISVQI NLGKRAVKRP  480
AAGVPSKAPT DPASSNEIGQ QLAMLGGGAE DPSHAAKRHK PGNS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801932.10.0transcription factor BIM2-like isoform X12
TrEMBLA0A2S3H0N90.0A0A2S3H0N9_9POAL; Uncharacterized protein
STRINGGRMZM2G089501_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-62BES1-interacting Myc-like protein 2