PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 349aa MW: 36878 Da PI: 6.2728 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 171 | 225 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Pahal.B03016.1 171 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 225 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.5 | 1.2e-40 | 171 | 261 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Pahal.B03016.1 171 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 261 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-18 | 156 | 225 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.8E-18 | 161 | 228 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 167 | 227 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-15 | 169 | 231 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.51E-17 | 171 | 228 | No hit | No description |
Pfam | PF00046 | 4.0E-15 | 171 | 225 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 202 | 225 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.4E-24 | 227 | 270 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.3E-10 | 227 | 261 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MELGLSLGET MADAGRDLVL GLGMGAGAMR DEDAETGRRE REARRELEFG AGRYGRSSPE 60 PAVRLTLLPG LMPGLGLPWP PPSEATRHLE ASTRGFDVNR APSLSEAGAA AEDDEEQDDA 120 GAGAAAASSS PNNSAGSFPT DFSAHGQAGP GGGGDRAGSR ASDEDEGGSA RKKLRLSKEQ 180 SAFLEESFKE HATLNPKQKL ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC 240 ETLTEENRRL QKELAELRAL KTVHPFYMHL PATTLSMCPS CERVASNSAP AAAAPAQAAS 300 SHPSPAGGSI ASAPPEQRPS SFAALFSSPL SRPLAAQQQP QPQAPASS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 227 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802237.1 | 0.0 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | Q67UE2 | 1e-144 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A2S3GZZ0 | 0.0 | A0A2S3GZZ0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J20342.1.p | 1e-162 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-60 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03016.1 |