PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 349aa    MW: 36878 Da    PI: 6.2728
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03016.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17171225256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Pahal.B03016.1 171 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 225
                     788899***********************************************98 PP

2HD-ZIP_I/II126.51.2e-40171261192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Pahal.B03016.1 171 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 261
                     69*************************************************************************************9.555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-18156225IPR009057Homeodomain-like
SuperFamilySSF466892.8E-18161228IPR009057Homeodomain-like
PROSITE profilePS5007116.989167227IPR001356Homeobox domain
SMARTSM003891.0E-15169231IPR001356Homeobox domain
CDDcd000867.51E-17171228No hitNo description
PfamPF000464.0E-15171225IPR001356Homeobox domain
PROSITE patternPS000270202225IPR017970Homeobox, conserved site
SMARTSM003401.4E-24227270IPR003106Leucine zipper, homeobox-associated
PfamPF021831.3E-10227261IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MELGLSLGET MADAGRDLVL GLGMGAGAMR DEDAETGRRE REARRELEFG AGRYGRSSPE  60
PAVRLTLLPG LMPGLGLPWP PPSEATRHLE ASTRGFDVNR APSLSEAGAA AEDDEEQDDA  120
GAGAAAASSS PNNSAGSFPT DFSAHGQAGP GGGGDRAGSR ASDEDEGGSA RKKLRLSKEQ  180
SAFLEESFKE HATLNPKQKL ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC  240
ETLTEENRRL QKELAELRAL KTVHPFYMHL PATTLSMCPS CERVASNSAP AAAAPAQAAS  300
SHPSPAGGSI ASAPPEQRPS SFAALFSSPL SRPLAAQQQP QPQAPASS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219227RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802237.10.0homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE21e-144HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A2S3GZZ00.0A0A2S3GZZ0_9POAL; Uncharacterized protein
STRINGPavir.J20342.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-60homeobox from Arabidopsis thaliana