PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00604.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 538aa    MW: 56121 Da    PI: 7.4072
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00604.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS195.82.7e-601615322374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl..fsevs 88 
                     ++lL  cA av++g+l++aq+l   l elas +gd+++Rlaa+ + ALa+rl    ++  ++++++ + +  +      + +l+  +l  f+evs
  Pahal.B00604.1 161 EQLLNPCAAAVEAGNLSRAQHLFYVLGELASFSGDANHRLAAHGLHALARRLPAaVGTAAAASVRVPPCECPTpafagAEPRLFRASLikFHEVS 255
                     689*************************************************99444444444433333322334554333333333379***** PP

            GRAS  89 PilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeel 172
                     P++ + + +aN aI +a+++     + +H++D+++s+G+QWp+Ll++L+  p  + pps+R+T+ g++++       + +       L ++A+++
  Pahal.B00604.1 256 PWFALPNALANAAIAQAAARGatdaRPLHVVDLGVSHGVQWPTLLESLTRLPggRAPPSVRLTVGGPAATPpapfsASPQGYDFSPHLLRYAKSI 350
                     ****************987665666789************************656699*****9998666688888888999999********** PP

            GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                     ++++ ++   a +l+++  + +   pgEal+V+l+++l +        ++ r+++L+ v++l+P++vv++e +a   +++ + +f+  le  + +
  Pahal.B00604.1 351 NLQLAISR--AASLDSV--HGF-ATPGEALVVCLQFRLGHAT------ADVRTDILSKVRGLNPELVVLSELDAGG-DGTAAGEFTARLELLWRF 433
                     ******98..4555555..444.568**********999987......4456799****************99986.88889************* PP

            GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                     ++s++a +   + eer+ +E+e     +   v+   a      e    Wrer+ +aGF++++++ +a+++ak+llrk++ +++++     g + l
  Pahal.B00604.1 434 LESTSAAFKGRDgEERRLLEAE-----AGTSVTGDAAG-----EGRDAWRERMAAAGFEEAAFGGEAVESAKSLLRKYDgGWEMSASGAAGVVAL 518
                     ****887633332555555555.....55555555554.....55559*******************************777777778899999* PP

            GRAS 361 gWkdrpLvsvSaWr 374
                      Wk+rp+ ++S Wr
  Pahal.B00604.1 519 RWKGRPVSFCSLWR 532
                     *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.904134511IPR005202Transcription factor GRAS
PfamPF035149.2E-58161532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSMHISSSKL ACMKPMSCHE QEHPELAAAT SSNGFDWLED SISFLTADVD IASGYGWWSN  60
PAEAQQDDIG SVVAQTLSPP APLPTTSSPL AHASPSIASP PVSSPSEPSS KKRKSPAHKA  120
SNSSVSNQRR RAEQDRPGGG GKKSGSKGGG AGSDRDTRWA EQLLNPCAAA VEAGNLSRAQ  180
HLFYVLGELA SFSGDANHRL AAHGLHALAR RLPAAVGTAA AASVRVPPCE CPTPAFAGAE  240
PRLFRASLIK FHEVSPWFAL PNALANAAIA QAAARGATDA RPLHVVDLGV SHGVQWPTLL  300
ESLTRLPGGR APPSVRLTVG GPAATPPAPF SASPQGYDFS PHLLRYAKSI NLQLAISRAA  360
SLDSVHGFAT PGEALVVCLQ FRLGHATADV RTDILSKVRG LNPELVVLSE LDAGGDGTAA  420
GEFTARLELL WRFLESTSAA FKGRDGEERR LLEAEAGTSV TGDAAGEGRD AWRERMAAAG  480
FEEAAFGGEA VESAKSLLRK YDGGWEMSAS GAAGVVALRW KGRPVSFCSL WRPACSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-2815653383474Protein SHORT-ROOT
5b3h_B3e-2815653329420Protein SHORT-ROOT
5b3h_E3e-2815653329420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280150.0KJ728015.1 Zea mays clone pUT6151 GRAS transcription factor (GRAS74) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A2S3IPX40.0A0A2S3IPX4_9POAL; Uncharacterized protein
STRINGGRMZM2G110067_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.17e-78GRAS family protein