PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 617aa MW: 66424.7 Da PI: 6.8674 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2.1e-12 | 279 | 335 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + +g rk + g ++t+++Aa+a++ a++k++g Pahal.B00089.1 279 SRYRGVTRHRWTGRYEAHLWDnSCRkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 335 79*******************54445554335555.77***99*************98 PP | |||||||
2 | AP2 | 46.6 | 8.8e-15 | 378 | 429 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW ++I + +k +lg+f t eeAa+a++ a+ k++g Pahal.B00089.1 378 SIYRGVTRHHQQGRWQSRIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 429 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.3E-10 | 279 | 335 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.68E-18 | 279 | 344 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-14 | 279 | 345 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.833 | 280 | 343 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-21 | 280 | 349 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-12 | 280 | 344 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 281 | 292 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-17 | 378 | 438 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-8 | 378 | 429 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.77E-23 | 378 | 439 | No hit | No description |
PROSITE profile | PS51032 | 18.597 | 379 | 437 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-31 | 379 | 443 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-18 | 379 | 437 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 419 | 439 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MGEMASGSNW LGFSLAPHTA MEVPNASEPA PAHHAPPPTS TTISSSGNNA AATSNFLFSP 60 MAAPYPGYYC VGGAYGDGTS SAGVYYSHLP TVPIKSDGSI CSIEGMMPSS PPKLEDFLGG 120 GNGNGGGQET ATYYSHQQGQ EEEASRDYHQ YQPHQLVPYN FQPLTEAEML QEDAAPIDEA 180 MAAAKNFLLT SYGACYSNGE MHPLSLSMMS PGSQSSSCVS AAPQQQQHQM AAAASAAAAQ 240 GRSNGGGEQG VGRKRGTGKG GQKQPVHRKS IDTFGQRTSR YRGVTRHRWT GRYEAHLWDN 300 SCRKDGQTRK GRQGGYDTED KAARAYDLAA LKYWGPATHI NFPVENYQDE LEEMKSMTRQ 360 EFVAHLRRRS SGFSRGASIY RGVTRHHQQG RWQSRIGRVA GNKDLYLGTF TTQEEAAEAY 420 DIAAIKFRGL NAVTNFDITR YDVDKIMESS TLLPVEEARK VKAIEATNGV PMMHNNGSRE 480 LNPAEETSAD WRMVLHGSSQ EAVHCPEAVD PQKGIMTHSS LHGIVGLDVS CVAHDHHLDV 540 PGKSGGVNFS NSSSLVTSLG NSREGSPERL GLAMMYGKQQ PHAVSLAAMS PWMPMPAPAA 600 QHVASHLPVF AAWADA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796858.1 | 0.0 | AP2-like ethylene-responsive transcription factor CRL5 | ||||
Swissprot | Q84Z02 | 1e-135 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A3L6SCT8 | 0.0 | A0A3L6SCT8_PANMI; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | Pavir.Ia03990.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-103 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00089.1 |
Publications ? help Back to Top | |||
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