PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.A03359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 29717.2 Da PI: 4.4991 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 43.5 | 9.8e-14 | 39 | 90 | 78 | 128 |
NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g++ g+kk++v y + + k ekt+Wvmh+y++ Pahal.A03359.1 39 LGEVRWNKTGRTKPVVI-GGTHLGCKKIMVMYasNVKGGKQEKTNWVMHQYHV 90 34789************.999***********6544667778*********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.094 | 1 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-15 | 36 | 109 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-5 | 41 | 90 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MTGSVSAASL SLFPFLAVLS RPGASRFGLK RRKINTNELG EVRWNKTGRT KPVVIGGTHL 60 GCKKIMVMYA SNVKGGKQEK TNWVMHQYHV GTGEDEKDSE FVVSKLFYQQ QPKAGEKISE 120 GMGDHMEPVY AAIDLADCPP LMDLSSLPLE EDNSNQETVQ KSEHNFDQAE DEDSHPSQDP 180 KWWEGESQFM LNSQQLAECM SICDEFLQSQ NSSGNGDEPD DLKKDLKECQ KLDDSNDTNL 240 ELECIPEFRL SQLVCFATTW IEGKI* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955196.1 | 1e-141 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6QCI3 | 1e-161 | A0A3L6QCI3_PANMI; NAC domain-containing protein 8-like | ||||
STRING | Pavir.Aa00442.1.p | 1e-157 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 5e-33 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.A03359.1 |