PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YB | ||||||||
Protein Properties | Length: 261aa MW: 27601.5 Da PI: 7.1703 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.1 | 1.2e-53 | 29 | 124 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 reqdr++Pianv+rim++vlP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvepl+vyl++yre+ege Pahal.A03225.1 29 REQDRLMPIANVIRIMRRVLPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLSVYLHRYREFEGE 123 89*******************************************************************************************98 PP NF-YB 97 k 97 Pahal.A03225.1 124 A 124 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.5E-49 | 24 | 125 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.54E-38 | 31 | 128 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-25 | 35 | 98 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.8E-17 | 62 | 80 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 65 | 81 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.8E-17 | 81 | 99 | No hit | No description |
PRINTS | PR00615 | 7.8E-17 | 100 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDSASGFLPA AGAANGSAAG GGAQQQPIRE QDRLMPIANV IRIMRRVLPP HAKISDDAKE 60 TIQECVSEYI SFITGEANER CQREQRKTIT AEDVLWAMSR LGFDDYVEPL SVYLHRYREF 120 EGEARGVVGL GAPGAARGGS GDHHHHHHPS MLKSRAPGAM APHHHDMQLH ASMYGAPPCP 180 RTTATASMPH HGGGHQYLPY PYEAAYGGEH AMAAYYGSAA AYGAPGNGGS GDGSGSSGGS 240 ASRTPQGGSF EHRHPFASYK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 8e-61 | 28 | 119 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243257 | 0.0 | AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792076.1 | 1e-135 | nuclear transcription factor Y subunit B-like | ||||
TrEMBL | A0A2T7FBI6 | 1e-145 | A0A2T7FBI6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab03027.1.p | 1e-116 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-63 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03225.1 |