PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02754.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 232aa    MW: 25487.4 Da    PI: 5.2131
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02754.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-1849102456
                     -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Pahal.A02754.1  49 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 102
                     458**************8899********************************9 PP
2HD-ZIP_I/II121.64e-3947140193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+++l+e
  Pahal.A02754.1  47 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALQAQYDALHARVESLKQEKLALAAQLDE 140
                     69*****************9999*******************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.21E-1743106IPR009057Homeodomain-like
PROSITE profilePS5007117.15143104IPR001356Homeobox domain
SMARTSM003894.7E-1746108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1849111IPR009057Homeodomain-like
PfamPF000461.2E-1549102IPR001356Homeobox domain
CDDcd000861.07E-1552105No hitNo description
PRINTSPR000315.4E-77584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000315.4E-784100IPR000047Helix-turn-helix motif
PfamPF021834.2E-14104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERDCQFVVV PPRHGQYEEG PFVHQLMVAG DPDPAGAGRG GGGVGGERKR RFTEEQVRSL  60
ETTFHARRAK LEPREKAELA RELGLQPRQV AIWFQNKRAR WRSKQLEHDY AALQAQYDAL  120
HARVESLKQE KLALAAQLDE LKRRLSGRQD QPSASCEVSG GAEAADGRMN SASCVAEDDG  180
AVTPAVAASE ESAAAEYCYD HAPYGGGLLE PFCTTPELWD TWPLLEWNAV A*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816119.11e-169homeobox-leucine zipper protein HOX24-like
SwissprotA2X7U13e-82HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A2S3GRI91e-168A0A2S3GRI9_9POAL; Uncharacterized protein
STRINGPavir.J39801.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.26e-28homeobox 7