PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00867.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 595aa    MW: 62810.7 Da    PI: 8.2802
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00867.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.9e-11382425452
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                     +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ +Y++
  Pahal.A00867.1 382 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 425
                     78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16378446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15381447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9382425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-5393432No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDTLFVLGQE SRLRILQRAA ARVPGCAYLC AWAALPAAQP AAASSSSAAT SARRLLCCLN  60
AWFCDGGANC RGDAGRVRAL FDAYRGSLCA AVSGCVPGWA YKDGRAFMEL PAHDLASSAS  120
LPAQQQFYQM AAFMGCESGE IEVGMSTAAS GSPMSLESSL QQVFSEDFFQ QSLLEELLQL  180
PPTGPSSPSS SLPSVSVGSP VAEGSTSLLR TMAVTPAATP SSRSERQVPV PPHPLYPRPP  240
LAAPFSRHGR VHFPSPDADD AAMAEAMLAV ISASSSSALP TPSTSTAASP PGNHHHSARR  300
WPRRRGTTTT AFRAYNAALA PRAPWRPPGA PGQRMIKMGI SILRRMHMLR FNRERSGGTA  360
MAQRVPEEEE DPPPAPTSSQ LNHMISERRR RERLNESFEA LRGLLPPGSK KDKATVLAKT  420
LDYMNILVAQ IADLEARNRS LESRAHQHSN GGGGWKERPY SSPEQQEVVV LQGLSGASER  480
VQVHVTAAAA AGSASTPSSS SSSSAAAREV TVRVEARAAH GDVAELVARA LAVIREMGCF  540
TVAAVDGGRR PSDGVAHATF TLRATAGEFD EASLREAVMK AAEDSAAPPP SDDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386391ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057973e-35AP005797.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1131G07.
GenBankAP0149583e-35AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-35CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792423.10.0putative transcription factor bHLH041 isoform X2
TrEMBLA0A2S3GMP10.0A0A2S3GMP1_9POAL; Uncharacterized protein
STRINGPavir.J40109.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-13bHLH family protein