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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.A00592.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 297aa MW: 31365.2 Da PI: 9.1385 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.A00592.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 59.8 | 6.1e-19 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw +
Pahal.A00592.1 11 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56
79******************************.***********985 PP
|
| 2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 63 | 106 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r ++T+eEd ++ a+++lG++ W++Iar ++ gRt++ +k++w++
Pahal.A00592.1 63 RRPFTPEEDAAILAAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 106
679*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MGVESECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ 60
VERRPFTPEE DAAILAAHAR LGNRWAAIAR LLPGRTDNAV KNHWNSSLKR KLATTTLEAG 120
DAEPPCKRAS PGPGSPTGSE RSELSHGSGG GGAQVFRPVP RAGGFDAISA ADARPPPPPR 180
DEDPLTSLSL SLPGLEQASS GFRHDSARSH FQELSPSRSP SPPSPSSSTT GPYPFSGELV 240
AAMQEMIRAE VRKYMSGAGL RAGCGAGAVG EACMPQLVEG VMRAAAERVG AVVTRP*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT038391 | 0.0 | BT038391.1 Zea mays full-length cDNA clone ZM_BFb0229K03 mRNA, complete cds. |
| GenBank | EU956045 | 0.0 | EU956045.1 Zea mays clone 1556153 MYB transcription factor TaMYB1 mRNA, complete cds. |
| GenBank | HQ858701 | 0.0 | HQ858701.1 Zea mays clone UT1157 MYB transcription factor mRNA, partial cds. |
