PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00557.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARR-B | ||||||||
Protein Properties | Length: 638aa MW: 69308.4 Da PI: 6.4652 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.5 | 6.2e-28 | 210 | 263 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl Pahal.A00557.1 210 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 263 79*******************.********************************8 PP | |||||||
2 | Response_reg | 79.5 | 1.2e-26 | 28 | 136 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ +++l+++l + +y +v+++ ++ al+ll+ek+ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge +++ + + G Pahal.A00557.1 28 VLAVDDDPTCLKVLENLLLRCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITHG 120 799********************.***************888888*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l++ Pahal.A00557.1 121 ACDYLLKPVRIEQLRT 136 **************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.4E-198 | 1 | 637 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 7.83E-35 | 25 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.0E-42 | 25 | 168 | No hit | No description |
SMART | SM00448 | 5.0E-32 | 26 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.159 | 27 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.0E-24 | 28 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.42E-27 | 29 | 141 | No hit | No description |
SuperFamily | SSF46689 | 6.09E-20 | 207 | 267 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.34 | 207 | 266 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 208 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 210 | 263 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-6 | 212 | 262 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 638 aa Download sequence Send to blast |
MTVEEVKLEV KANGGHGAKD QFPVGMRVLA VDDDPTCLKV LENLLLRCQY HVTTTGQAAT 60 ALKLLREKKD QFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGET QTVMKGITHG 120 ACDYLLKPVR IEQLRTIWQH VVRRKSSDAK NHGNDNDDSG KKLQLASAEG DNGGVNRNKR 180 TSRKGRDDNG DDGDDSDDSN ENGDSSTQKK PRVVWSVELH RKFVAAVNQL GIDKAVPKKI 240 LDLMNVENIT RENVASHLQK YRLYLKRLSA DASRQANLTA AFGGRNPAYV NMGLEAFRQY 300 NNAYGRYRPV PTPNHSQSNN LLARMNSPSA FGMHGLLPSQ SLQIGHTQNN LSTSLGNVGG 360 MNNGNLIRGA HMPLQDSSNC FPTGPSGNSF ANISNGTTLV PTNNLPLHSL EPSNQQHLGR 420 MHSSSTDPFN SFVGESPQFP DLGRCNTTWP TAVSSSNVHE LGQKDSMSQP NLRVNGPKLE 480 PLSSFTEASS QIPLLGNETH GQVASLANTA LPMPFNQEAV PFTYGSSANS REMLNNNLAL 540 SNSGINSSLP NLRIDNSVVP RQTLDGGNSG GGVPPLQDCR IDQQAVSSQL NYNNDLMGTS 600 RLQRGLSGGL DDIVVDMFRP DRADDGVPFI DGDWELV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-25 | 206 | 269 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ858745 | 0.0 | HQ858745.1 Zea mays clone UT1443 ARR-B transcription factor mRNA, partial cds. | |||
GenBank | HQ858760 | 0.0 | HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802594.1 | 0.0 | two-component response regulator ORR24-like | ||||
Swissprot | Q6H805 | 0.0 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | A0A2S3GLU8 | 0.0 | A0A2S3GLU8_9POAL; Two-component response regulator | ||||
STRING | Pavir.Ab00568.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-108 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00557.1 |
Publications ? help Back to Top | |||
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