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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pahal.A00409.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 378aa MW: 41204.6 Da PI: 5.4352 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.A00409.2 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.6 | 5.2e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+lv v+++G g+W+ + r+ g+ R++k+c++rw ++l
Pahal.A00409.2 27 KGAWTAEEDEKLVAHVQRHGEGSWNQVRRETGLLRCGKSCRLRWANHL 74
79******************************99**********9986 PP
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2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++++eE++l ++++ +lG++ W++Ia++++ gRt++++k++w++
Pahal.A00409.2 80 RGAMSPEEELLVLRLHSLLGNK-WARIAAHLP-GRTDNEIKNYWNT 123
899*******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 378 aa
Download sequence Send
to blast |
MARGGGSRRF GLKGPPEEEE EGAGLKKGAW TAEEDEKLVA HVQRHGEGSW NQVRRETGLL 60 RCGKSCRLRW ANHLRPDLKR GAMSPEEELL VLRLHSLLGN KWARIAAHLP GRTDNEIKNY 120 WNTRTKRRER AGLPLYPPEV EHEVALIRAG GPNTILGDDA GAAHELPFLF DAADPLASLP 180 LPPPASDSPA LLYHFGKAAQ EPLPLPYISN LQIDPVKYLQ PLAPLLPPMA HRELPSVQSA 240 AIATGAALET MFLRELGHQQ VPDANLVNFG AMPGLVSYEN AVSSHCVQEE VQNLGDKRGR 300 LSGDEKPAKR LLASSVADDK EMPNLLRDDV TGEAPGHDAV VADQTIFLTA GSIDDDELQH 360 LMMPSAPLIC DEDGWNQ*
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