PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00409.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 378aa    MW: 41204.6 Da    PI: 5.4352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00409.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-172774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv  v+++G g+W+ + r+ g+ R++k+c++rw ++l
   Pahal.A00409.2 27 KGAWTAEEDEKLVAHVQRHGEGSWNQVRRETGLLRCGKSCRLRWANHL 74
                     79******************************99**********9986 PP
2Myb_DNA-binding51.13.1e-1680123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE++l ++++ +lG++ W++Ia++++ gRt++++k++w++
   Pahal.A00409.2  80 RGAMSPEEELLVLRLHSLLGNK-WARIAAHLP-GRTDNEIKNYWNT 123
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9052274IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-222277IPR009057Homeodomain-like
SuperFamilySSF466891.09E-2924121IPR009057Homeodomain-like
SMARTSM007175.3E-142676IPR001005SANT/Myb domain
PfamPF002491.1E-142774IPR001005SANT/Myb domain
CDDcd001679.80E-122974No hitNo description
PROSITE patternPS0017504251IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129424.8475129IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2378128IPR009057Homeodomain-like
SMARTSM007172.9E-1579127IPR001005SANT/Myb domain
PfamPF002492.7E-1580123IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MARGGGSRRF GLKGPPEEEE EGAGLKKGAW TAEEDEKLVA HVQRHGEGSW NQVRRETGLL  60
RCGKSCRLRW ANHLRPDLKR GAMSPEEELL VLRLHSLLGN KWARIAAHLP GRTDNEIKNY  120
WNTRTKRRER AGLPLYPPEV EHEVALIRAG GPNTILGDDA GAAHELPFLF DAADPLASLP  180
LPPPASDSPA LLYHFGKAAQ EPLPLPYISN LQIDPVKYLQ PLAPLLPPMA HRELPSVQSA  240
AIATGAALET MFLRELGHQQ VPDANLVNFG AMPGLVSYEN AVSSHCVQEE VQNLGDKRGR  300
LSGDEKPAKR LLASSVADDK EMPNLLRDDV TGEAPGHDAV VADQTIFLTA GSIDDDELQH  360
LMMPSAPLIC DEDGWNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28251285107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826291.10.0transcriptional activator Myb-like isoform X2
RefseqXP_025826299.10.0transcriptional activator Myb-like isoform X2
TrEMBLA0A2S3GLW10.0A0A2S3GLW1_9POAL; Uncharacterized protein
STRINGPavir.Ab00447.1.p1e-133(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.22e-49myb domain protein 101