PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049878-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 656aa    MW: 72731.4 Da    PI: 4.9193
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049878-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.52e-171878257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+++++eq+++L + F + + +ps+ee++++ ++l    ++ + +V++WFqNr+ + k+
  PSME_00049878-RA 18 KSRWNPKPEQIQILDAIFTSgTVNPSREEIKRIRAQLemfgQVGDVNVFYWFQNRKSRSKR 78
                      89*****************99**************************************97 PP
2Wus_type_Homeobox104.66.5e-341779264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a++RW+P+peQi+iL+++++sG+++P++eei+ri+a+Le +G+++d NVfyWFQNrk+R+++k
   PSME_00049878-RA 17 AKSRWNPKPEQIQILDAIFTSGTVNPSREEIKRIRAQLEMFGQVGDVNVFYWFQNRKSRSKRK 79
                       689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-111280IPR009057Homeodomain-like
PROSITE profilePS5007111.2081479IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-71581IPR009057Homeodomain-like
SMARTSM003892.0E-71683IPR001356Homeobox domain
PfamPF000462.8E-151878IPR001356Homeobox domain
CDDcd000862.88E-71879No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
ELSHNYTLER DSSPPKAKSR WNPKPEQIQI LDAIFTSGTV NPSREEIKRI RAQLEMFGQV  60
GDVNVFYWFQ NRKSRSKRKP RLPAAQRTKA RTQSGTQSSS SSTSTSRSTS AQTNKTIPDI  120
SNSPASSIQT NIGNQYRSSA VPISQFAGHQ YDVQGVYEEM NKTSSVQPQT FTALLNSPLN  180
PMHNNVENQN SYSSVPVPSF AGHHYDLQAI PSQTFTGLLN SPLNPMPNNP ENLYSYSSVP  240
VPSFAGHHYD LQAVPSQRST GFPNNPPNYD LQAVPSQTFT GFPNNPPNYM HSQVRDQYCS  300
SSTVPVGSSA ENLYGQERLY EEMSKASAFD QSQALADVAN IRPNPMQSHI PDQYFSSSVL  360
PVSSTAGSMT FDQCNTIVDV SNIQPNPMQS HNPDQYFSSS SAVPVSSSAG QIQDLESWFE  420
EMSKTSTPVQ SQTITDLPNT LPNSMQSNVQ AQYSSSSAVP VHSPAEELND LDRLLEEMIN  480
SDELNNMQAA GTGAAGGGQS MLNEGIGTVQ DGLIINSNVP LISVLINDAQ ITVPSGQINF  540
RDFFGDNALL FHSSGEPVLV NEFGFTSLEH GAMYFMVKVK IPRNKDKKCN CEDYEKVVVD  600
NFDFRPFGFE NFWLLHDEFL EKLKEWWEEM ATIRRTQMYQ LSGSKKDDEI PTSSIM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480RSKRKPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-25homeobox-3