PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00049738-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 215aa MW: 24589.3 Da PI: 7.9112 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.7 | 6.4e-16 | 23 | 83 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+ ++++q+++Le+ ++ +p++ee++++ +l ++++ +V++WFqNr+a+ k+ PSME_00049738-RA 23 KTRWHPKPDQIQILEAIVNSgMVNPQREEIKRIRGQLeefgHVEDVNVFYWFQNRKARVKR 83 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 102.3 | 3.4e-33 | 22 | 85 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 a+tRW P+p+Qi+iLe++ +sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k+ PSME_00049738-RA 22 AKTRWHPKPDQIQILEAIVNSGMVNPQREEIKRIRGQLEEFGHVEDVNVFYWFQNRKARVKRKR 85 689**********************************************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.232 | 19 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-4 | 21 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-9 | 22 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-6 | 23 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.18E-5 | 23 | 85 | No hit | No description |
Pfam | PF00046 | 1.0E-13 | 23 | 83 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MKSALSHNYV PEKERERTVP VAKTRWHPKP DQIQILEAIV NSGMVNPQRE EIKRIRGQLE 60 EFGHVEDVNV FYWFQNRKAR VKRKRISRRQ MCKAPIFIFI FIDINNINVN ISSVSTCHHC 120 ESSPLFFCWA GNFFICRAPL QSAEGVREAS INIDNSVITV IVNDNPMQVP KEPINLGAFF 180 GDDALLLNSS GHLVQVNEWG FTMEGLDIGA AYFLI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX411953 | 6e-62 | JX411953.1 Picea abies WUSCHEL homeobox protein WOX8D (WOX8D) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | R9R867 | 1e-58 | R9R867_PICAB; WUSCHEL homeobox protein WOX8D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33880.1 | 4e-28 | homeobox-3 |