PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00048850-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | WOX | ||||||||
Protein Properties | Length: 235aa MW: 25768.9 Da PI: 8.7193 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.6e-18 | 23 | 83 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+ ++++q+++Le+ F++ +p +ee++++ +l ++++ +V++WFqNr+a+ k+ PSME_00048850-RA 23 KTRWHPKPDQIQILEAIFNSgMVNPPREEIKRIRGQLeefgHVEDVNVFYWFQNRKARVKR 83 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.1 | 1.1e-34 | 22 | 84 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a+tRW P+p+Qi+iLe++++sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k PSME_00048850-RA 22 AKTRWHPKPDQIQILEAIFNSGMVNPPREEIKRIRGQLEEFGHVEDVNVFYWFQNRKARVKRK 84 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.236 | 19 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-6 | 21 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.12E-12 | 22 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-8 | 23 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.96E-7 | 23 | 85 | No hit | No description |
Pfam | PF00046 | 9.1E-16 | 23 | 83 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MKGALSHNYV PGKERERTVP VAKTRWHPKP DQIQILEAIF NSGMVNPPRE EIKRIRGQLE 60 EFGHVEDVNV FYWFQNRKAR VKRKRQLQNA EESESRAAKC ARPLSSSSSS LTSTTSTSTS 120 VQSQPVTIVN QAPSSSAGLV ISSFAAHHCN QQVNQKMSTT QYSNIQPIGA GGATESKGIL 180 NEGGVREDSI NIDNSVITVI VNDNPMQVPK EPINLGAFFG DDALLLDSSG HMVQI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX411953 | 8e-74 | JX411953.1 Picea abies WUSCHEL homeobox protein WOX8D (WOX8D) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | R9R867 | 3e-81 | R9R867_PICAB; WUSCHEL homeobox protein WOX8D | ||||
TrEMBL | R9R8D1 | 2e-81 | R9R8D1_PICAB; WUSCHEL homeobox protein WOX8B |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 1e-31 | homeobox-3 |