PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00039250-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

GRAS

Protein Properties

Length: 850aa MW: 95421 Da PI: 5.7274

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00039250-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	305.4	1.3e-93	406	741	1	355
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+ lL++cA+av+++d++ a+++L++++ +as +gd +qRla yf+ AL arl++s+ +l+ +l++ ts ++ l+a++l+ ++P+ k PSME_00039250-RA 406 LRALLVHCAQAVATDDTRGANEILKQIRRHASAYGDGTQRLANYFADALVARLSGSGGRLFTTLSSGLTS---AADILKAYQLLLFAFPYQKS 495 5789**********************************************************999999...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 ++++Nq++l+ +e+++r+Hi+Df+i +G+QWp+L+ +LasRp+ ++ e+eetg+rLa++A+++gvpfe+++ +a ++ PSME_00039250-RA 496 FYFLTNQTVLNVTEKSNRLHIVDFGILYGFQWPSLILSLASRPAA---------------ERIEIEETGRRLADYAKSFGVPFEYHA-IAAKW 572 **************************************876...............5689*******************.799 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 e++++eeL+++++E+l+Vn++++ +llde+v les+++ vL+ ++s++P+v+++ + n++ F +rf eal +ysalfd++e+ +pre+ PSME_00039250-RA 573 ENVDVEELSLRSDEVLVVNCMYRFNNLLDETVVLESPKNIVLNKIRSMNPRVFIHGVVNGAFNAPFFITRFREALFHYSALFDAIETIVPREH 665 ******************************************************************************************* PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 +r +E+el+gr i nvvaceg er+ r et+++W+ r+++aGF ++pl+ + ++ + ++ + + + v+e++ PSME_00039250-RA 666 PQRLLLEKELFGRLILNVVACEGLERVVRPETYKHWQVRIQRAGFVQLPLDRAIFSETRDKVKSFFHKDFGVDEDE 741 **************************************************************998889999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.371	380	740	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-91	406	741	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MADEKTGIFH SNNINVVSNN IRLQRPCLQQ GAAMPATQFR RFQPPMPDEK TGIFYSDNIN 60 GVSNNIWLQR PWLQQETAMP ATQFRGSLSS QKSITISDGE SEDTEVYSDI VLKYISDMLM 120 EENMDEKKCM YQECSALQAT VKPFYDILGE NYPPQGLCNS NTVGENQKQP LNYYEDDVQI 180 KIEDSSWIGD FFNSQMPEGF ESPLSPNLSA GYSSRYSFSY SGSSTVTDGL PGSPTYEPSL 240 SESKQGLEVG KFEEDIQVVP KQNFEPGVEN GCHFRAPKKV SDPDPDLQLG KREDAIFGVG 300 VTFQMNAAHR EDENGPKREK DPHRGDLDLE DRDSNKLSAV YPDNVIRNES FDKVLLCAEN 360 GRVFLDVQLE ILQNGVQKSV QSGFVKGLQG SKARGRKQGK RAVVDLRALL VHCAQAVATD 420 DTRGANEILK QIRRHASAYG DGTQRLANYF ADALVARLSG SGGRLFTTLS SGLTSAADIL 480 KAYQLLLFAF PYQKSFYFLT NQTVLNVTEK SNRLHIVDFG ILYGFQWPSL ILSLASRPAA 540 ERIEIEETGR RLADYAKSFG VPFEYHAIAA KWENVDVEEL SLRSDEVLVV NCMYRFNNLL 600 DETVVLESPK NIVLNKIRSM NPRVFIHGVV NGAFNAPFFI TRFREALFHY SALFDAIETI 660 VPREHPQRLL LEKELFGRLI LNVVACEGLE RVVRPETYKH WQVRIQRAGF VQLPLDRAIF 720 SETRDKVKSF FHKDFGVDED ECSTYAARPN PWKASEDKGG PLQVVIKVFF FAQDPDCPGF 780 SLLFPEPVSV SLLSLVGATS LGQVVKIFSS TSEFPRALSF GLARMLSTAL ASGTFPFHLR 840 WSRCTLRNLC

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MADEKTGIFH SNNINVVSNN IRLQRPCLQQ GAAMPATQFR RFQPPMPDEK TGIFYSDNIN  60
GVSNNIWLQR PWLQQETAMP ATQFRGSLSS QKSITISDGE SEDTEVYSDI VLKYISDMLM  120
EENMDEKKCM YQECSALQAT VKPFYDILGE NYPPQGLCNS NTVGENQKQP LNYYEDDVQI  180
KIEDSSWIGD FFNSQMPEGF ESPLSPNLSA GYSSRYSFSY SGSSTVTDGL PGSPTYEPSL  240
SESKQGLEVG KFEEDIQVVP KQNFEPGVEN GCHFRAPKKV SDPDPDLQLG KREDAIFGVG  300
VTFQMNAAHR EDENGPKREK DPHRGDLDLE DRDSNKLSAV YPDNVIRNES FDKVLLCAEN  360
GRVFLDVQLE ILQNGVQKSV QSGFVKGLQG SKARGRKQGK RAVVDLRALL VHCAQAVATD  420
DTRGANEILK QIRRHASAYG DGTQRLANYF ADALVARLSG SGGRLFTTLS SGLTSAADIL  480
KAYQLLLFAF PYQKSFYFLT NQTVLNVTEK SNRLHIVDFG ILYGFQWPSL ILSLASRPAA  540
ERIEIEETGR RLADYAKSFG VPFEYHAIAA KWENVDVEEL SLRSDEVLVV NCMYRFNNLL  600
DETVVLESPK NIVLNKIRSM NPRVFIHGVV NGAFNAPFFI TRFREALFHY SALFDAIETI  660
VPREHPQRLL LEKELFGRLI LNVVACEGLE RVVRPETYKH WQVRIQRAGF VQLPLDRAIF  720
SETRDKVKSF FHKDFGVDED ECSTYAARPN PWKASEDKGG PLQVVIKVFF FAQDPDCPGF  780
SLLFPEPVSV SLLSLVGATS LGQVVKIFSS TSEFPRALSF GLARMLSTAL ASGTFPFHLR  840
WSRCTLRNLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-40	410	715	8	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937596.1	0.0	scarecrow-like protein 9
Refseq	XP_010937597.1	0.0	scarecrow-like protein 9
Refseq	XP_029123935.1	0.0	scarecrow-like protein 9
TrEMBL	A3E2G2	0.0	A3E2G2_PINRA; SCARECROW-like protein 1
STRING	XP_010256894.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-139	GRAS family protein