PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032080-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 374aa    MW: 41619.4 Da    PI: 6.563
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032080-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.1e-21103163257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       r+R+t++++ql++Le+lFe+ + +ps+++++e++++l    +++e++V++WFqNr+a+ k+
  PSME_00032080-RA 103 RQRWTPSQTQLQILESLFEQgHATPSKQKIKEITMELsqhgQISETNVYNWFQNRKARAKR 163
                       89*****************99**************************************97 PP
2Wus_type_Homeobox1001.7e-32102165265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtP+++Q++iLe+l+++G  tP+k++i++it+eL+++G+i+++NV++WFQNrkaR ++kq
   PSME_00032080-RA 102 ARQRWTPSQTQLQILESLFEQGHATPSKQKIKEITMELSQHGQISETNVYNWFQNRKARAKRKQ 165
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-1698165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-1698165IPR009057Homeodomain-like
PROSITE profilePS5007114.81999164IPR001356Homeobox domain
SMARTSM003894.3E-13101168IPR001356Homeobox domain
PfamPF000461.1E-18103163IPR001356Homeobox domain
CDDcd000869.54E-13103165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKTLVSSTVT ELQPPGHMPS VAQRPAMANP NFVALHNNQV MTEDQMETLR RQICVYSTIC  60
NQLVEMHRAM SQQQPSSVPT LLLGQHMLYD LAQGNPGFRA SARQRWTPSQ TQLQILESLF  120
EQGHATPSKQ KIKEITMELS QHGQISETNV YNWFQNRKAR AKRKQLPSQR GGESDNETDD  180
ESPREKRFKP QRDSNAQNPK SGHSEADEQA PHKSDDMVQH GPCTTDQKQF GIQDNDSPSL  240
LPREDEIRPR VSFGSTMLGV GGSAEHESVE CLPEVKPIYS SVEVGHCDHD ASTTTGQADG  300
KPWQVPSVVV DVRRMLGENA VLVDSRGHMV PTNDMGVSFH PLNASEGYRF LSQYQCASGV  360
PLHAVRSNTG YPLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0858640.0EF085864.1 Picea sitchensis clone WS0292_C04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385206.13e-60WUSCHEL-related homeobox 8-like
RefseqXP_024385208.13e-60WUSCHEL-related homeobox 8-like
RefseqXP_024385209.13e-60WUSCHEL-related homeobox 8-like
RefseqXP_024395858.11e-59WUSCHEL-related homeobox 13-like isoform X1
RefseqXP_024395859.11e-59WUSCHEL-related homeobox 13-like isoform X1
RefseqXP_024395860.11e-59WUSCHEL-related homeobox 13-like isoform X1
RefseqXP_024395861.13e-60WUSCHEL-related homeobox 8-like isoform X2
RefseqXP_024395862.13e-60WUSCHEL-related homeobox 8-like isoform X2
RefseqXP_024395863.13e-60WUSCHEL-related homeobox 8-like isoform X2
TrEMBLA9NWZ90.0A9NWZ9_PICSI; Uncharacterized protein
STRINGPP1S224_106V6.14e-59(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-45WUSCHEL related homeobox 13