PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00026945-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 293aa MW: 32921.9 Da PI: 7.0001 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5e-18 | 54 | 114 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ PSME_00026945-RA 54 KPRWNPKPEQIRILESIFNSgMVNPPRDEIKRIRAQLqefgQVGDANVFYWFQNRKSRTKQ 114 89*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 112.2 | 2.7e-36 | 53 | 116 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+e+G+++d+NVfyWFQNrk+R +q+q PSME_00026945-RA 53 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIKRIRAQLQEFGQVGDANVFYWFQNRKSRTKQRQ 116 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-8 | 33 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.641 | 50 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-12 | 50 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-7 | 52 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.05E-7 | 53 | 116 | No hit | No description |
Pfam | PF00046 | 1.0E-15 | 54 | 114 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MNPNKHWPSM FKVKPSASHN QWHETSNSSA ISDQRPSYEG ASSENEERSQ PEPKPRWNPK 60 PEQIRILESI FNSGMVNPPR DEIKRIRAQL QEFGQVGDAN VFYWFQNRKS RTKQRQRHLH 120 SAESSRCNAE KSTTDHSKAI MDVANTTANS LHNIGTSYSS AMPATAFSAH KEHSYHVQMN 180 GEISNDQCSH MQTVATAAGR GGIFNEGEDV IYGRSITVLI NDIALEVPLG PINVKAVFGE 240 NAVLLHSTGQ PVLVNEWGFT LECLQHGAMY YVVCLIPTQN FIPLYLDKLP EYL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU944670 | 0.0 | GU944670.1 Picea abies putative wuschel homeobox protein WOX8/9 (wox8/9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311735.1 | 4e-75 | WUSCHEL-related homeobox 9-like | ||||
Swissprot | Q6X7J4 | 8e-46 | WOX9_ARATH; WUSCHEL-related homeobox 9 | ||||
TrEMBL | D5LMH9 | 1e-168 | D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9 | ||||
STRING | Gorai.011G031300.1 | 8e-69 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33880.1 | 3e-48 | homeobox-3 |
Publications ? help Back to Top | |||
---|---|---|---|
|