PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026945-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 293aa    MW: 32921.9 Da    PI: 7.0001
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026945-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-1854114257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  PSME_00026945-RA  54 KPRWNPKPEQIRILESIFNSgMVNPPRDEIKRIRAQLqefgQVGDANVFYWFQNRKSRTKQ 114
                       89*****************99*************************************996 PP

2Wus_type_Homeobox112.22.7e-3653116265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+e+G+++d+NVfyWFQNrk+R +q+q
   PSME_00026945-RA  53 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIKRIRAQLQEFGQVGDANVFYWFQNRKSRTKQRQ 116
                        689***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-833114IPR009057Homeodomain-like
PROSITE profilePS5007110.64150115IPR001356Homeobox domain
SuperFamilySSF466891.54E-1250119IPR009057Homeodomain-like
SMARTSM003891.8E-752119IPR001356Homeobox domain
CDDcd000861.05E-753116No hitNo description
PfamPF000461.0E-1554114IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNPNKHWPSM FKVKPSASHN QWHETSNSSA ISDQRPSYEG ASSENEERSQ PEPKPRWNPK  60
PEQIRILESI FNSGMVNPPR DEIKRIRAQL QEFGQVGDAN VFYWFQNRKS RTKQRQRHLH  120
SAESSRCNAE KSTTDHSKAI MDVANTTANS LHNIGTSYSS AMPATAFSAH KEHSYHVQMN  180
GEISNDQCSH MQTVATAAGR GGIFNEGEDV IYGRSITVLI NDIALEVPLG PINVKAVFGE  240
NAVLLHSTGQ PVLVNEWGFT LECLQHGAMY YVVCLIPTQN FIPLYLDKLP EYL
Functional Description ? help Back to Top
Source Description
UniProtHomeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9446700.0GU944670.1 Picea abies putative wuschel homeobox protein WOX8/9 (wox8/9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311735.14e-75WUSCHEL-related homeobox 9-like
SwissprotQ6X7J48e-46WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBLD5LMH91e-168D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
STRINGGorai.011G031300.18e-69(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-48homeobox-3
Publications ? help Back to Top
  1. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  4. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  5. Blein T,Pautot V,Laufs P
    Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection.
    Plants (Basel), 2013. 2(2): p. 230-47
    [PMID:27137374]