PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00019221-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WOX

Protein Properties

Length: 259aa MW: 28452.9 Da PI: 7.195

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00019221-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.9e-20	27	87	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eql++Le+lF++ ps++e++++A++l ++ +++V++WFqN++a+ k+ PSME_00019221-RA 27 KPRWNPKPEQLRILESLFNSgMVGPSRDEIKRIASQLqefgQVGDANVFYWFQNKKARSKQ 87 89***************99***********************************996 PP
2	Wus_type_Homeobox	110	1.3e-35	26	89	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQ++iLe+l++sG++ P+++ei+ri+++L+e+G+++d+NVfyWFQN+kaR++q+q PSME_00019221-RA 26 TKPRWNPKPEQLRILESLFNSGMVGPSRDEIKRIASQLQEFGQVGDANVFYWFQNKKARSKQRQ 89 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.742	23	88	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-14	24	93	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-8	25	92	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.3E-9	25	92	IPR009057	Homeodomain-like
Pfam	PF00046	2.5E-17	27	87	IPR001356	Homeobox domain
CDD	cd00086	4.03E-9	27	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MYIKVLRGLI CTGTTSVNQE RSTPETKPRW NPKPEQLRIL ESLFNSGMVG PSRDEIKRIA 60 SQLQEFGQVG DANVFYWFQN KKARSKQRQR HLHAESSKSS LEKTGTNQST EIINGANVTT 120 NSLPSIVPAT AFSTHQENYH VQTNGQMSNA QCSYMQAVAA AAAGGEIFNQ GTSEDFSYAR 180 SITVLINNIP VELPLGSINV RAVFGENAVL FHSTGHPVLI NEWGYTLECL QHGATYYMVP 240 TSDALKPMAD VEASTVPSV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU944670	8e-71	GU944670.1 Picea abies putative wuschel homeobox protein WOX8/9 (wox8/9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5LMH9	1e-111	D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	3e-38	WUSCHEL related homeobox 12