PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00010259-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | WOX | ||||||||
Protein Properties | Length: 289aa MW: 32360.9 Da PI: 9.6856 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.2e-18 | 10 | 70 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F + + +p ee++++ ++l ++ +V++WFqNrR + k+ PSME_00010259-RA 10 KSRWNPKPEQIQILESIFTSgTVNPASEEIKRIRAQLevfgQVGNVNVFYWFQNRRSRSKR 70 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 105 | 4.7e-34 | 9 | 71 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a++RW+P+peQi+iLe++++sG+++P++eei+ri+a+Le +G++++ NVfyWFQNr++R+++k PSME_00010259-RA 9 AKSRWNPKPEQIQILESIFTSGTVNPASEEIKRIRAQLEVFGQVGNVNVFYWFQNRRSRSKRK 71 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-9 | 6 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.742 | 6 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.12E-12 | 7 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-6 | 8 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.8E-16 | 10 | 70 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MQQSSAPKAK SRWNPKPEQI QILESIFTSG TVNPASEEIK RIRAQLEVFG QVGNVNVFYW 60 FQNRRSRSKR KPRFPAAQRT KARTQSGTQS SSSSTSTLRS TSVQTTTIPD LSNSPASSMQ 120 TNIGNQYRSS TVPISQLARH HYDMQPLYEE TNKASFVPPQ TFTALLNSPL NPMHNNLENQ 180 YSSYSSVPVP SLAGHHYDLQ AVPSQTFTGF QNNPPNYMHS HVQDQYCSSS TVPLASLPEK 240 LYGQERLYEE MSKTSTFDQS KTITDIANIQ PNSIHSHIPD QYLSSSALP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 69 | RSRSKR |
2 | 66 | 72 | RSKRKPR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | R9R8B6 | 7e-35 | R9R8B6_PICAB; WUSCHEL homeobox protein WOX8C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 9e-25 | homeobox-3 |