PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008684-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 290aa    MW: 32392.9 Da    PI: 6.5238
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008684-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-1958118257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R++++++q+++Le++F++   +ps+ee+e++  +l    ++ ++ V++WFqNr+ + k+
  PSME_00008684-RA  58 KPRWNPKPDQIQILENVFNSgRTNPSREEIERIRIQLeefgQVADASVFYWFQNRKSRSKH 118
                       89*****************99*************************************995 PP
2Wus_type_Homeobox101.17.9e-3357120265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        a++RW+P+p+Qi+iLe++++sG  +P++eei+ri+ +Lee+G++ d+ VfyWFQNrk+R+++k+
   PSME_00008684-RA  57 AKPRWNPKPDQIQILENVFNSGRTNPSREEIERIRIQLEEFGQVADASVFYWFQNRKSRSKHKK 120
                        689***********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.66154119IPR001356Homeobox domain
SuperFamilySSF466895.13E-1354125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-855124IPR009057Homeodomain-like
SMARTSM003896.7E-956123IPR001356Homeobox domain
CDDcd000866.04E-958122No hitNo description
PfamPF000461.7E-1658118IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMENNSREAV QPQREMDSKK HWPSFFKTKS TMRPPPYSEG VSSLNYVRER ERSPPKAKPR  60
WNPKPDQIQI LENVFNSGRT NPSREEIERI RIQLEEFGQV ADASVFYWFQ NRKSRSKHKK  120
RQVQATHKSE SVGAQVIDTP SSTSSASSAS TSLTSVQSKP ITDLTNSLQN NIGDQPDSSS  180
IVPVSSFSGH HYDSQVNENM SINQPCSNMQ AAGLLNQGTG VEQESTINAN PLISVFINDV  240
PHEIPMGPIN FKDFFGDDAL LLDASGQWVQ VNESGFTLEG LRNGATYFLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8D11e-83R9R8D1_PICAB; WUSCHEL homeobox protein WOX8B
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-29homeobox-3