PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK28804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C3H | ||||||||
Protein Properties | Length: 116aa MW: 13222.7 Da PI: 7.148 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.6 | 2.8e-15 | 42 | 67 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yG+ C+FaHg PK28804.1 42 FKTELCNKWQQTGACPYGEHCQFAHG 67 79***********************9 PP | |||||||
2 | zf-CCCH | 22.3 | 2.3e-07 | 80 | 105 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte+Cr +++ C+yG rC+F H+ PK28804.1 80 YKTEICRMVLAGDPCPYGHRCHFRHS 105 9**********55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-19 | 36 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-12 | 38 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.22 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-9 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-12 | 42 | 67 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-13 | 75 | 108 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-9 | 75 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 79 | 107 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 80 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
XQRVYVPGVN GTNGSSSSGG IQKEEQENLS GLEMEVYNQG MFKTELCNKW QQTGACPYGE 60 HCQFAHGLDE LRPVIRHPRY KTEICRMVLA GDPCPYGHRC HFRHSLTEQE KLMLPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-22 | 42 | 108 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108899.2 | 7e-58 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q6L5G1 | 9e-52 | C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | W9S101 | 2e-56 | W9S101_9ROSA; Zinc finger CCCH domain-containing protein 14 | ||||
STRING | XP_010108899.1 | 3e-57 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 1e-51 | C3H family protein |
Publications ? help Back to Top | |||
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