PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK28347.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 269aa MW: 30479.2 Da PI: 8.2961

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK28347.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.1	6.2e-35	40	180	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWkat 86 lp+G++F+Ptd+el+ ++L+ kv++++++++ +i+++d i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + +W++t PK28347.1 40 LPAGVKFDPTDQELL-QHLEGKVRSETCKVHPlideFIPTIDgengICYTHPQKLP-GVRKDGLVRHFFHRPSKAYTTGTRKRRKVHtdeeggETRWHKT 137 799**********.99*****5553333443444434445******.566666788**************744456555778 PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 gk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l PK28347.1 138 GKTRPVFV-GGRVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 180 ****.9*********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-39	35	199	IPR003441	NAC domain
PROSITE profile	PS51005	33.622	40	199	IPR003441	NAC domain
Pfam	PF02365	6.1E-16	41	180	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDDDDDEGRK DHNLIIRTCP SCGHQIKCQD KAGIHDLPGL PAGVKFDPTD QELLQHLEGK 60 VRSETCKVHP LIDEFIPTID GENGICYTHP QKLPGVRKDG LVRHFFHRPS KAYTTGTRKR 120 RKVHTDEEGG ETRWHKTGKT RPVFVGGRVK GYKKILVLYT NYGKQRKPEK TNWVMHQYHL 180 GNNEEEKEGE LVVSKVFYQT QPRQCGSVIK DLLNPAKNNN NLRQNDESFV EYSCNIPNSF 240 ISFDHAAQNG GTTPEISVTH FGAGSFLNS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881279.1	1e-143	NAC domain-containing protein 73-like
Refseq	XP_015881280.1	1e-143	NAC domain-containing protein 73-like
Swissprot	O49459	1e-120	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2P5FJ85	1e-159	A0A2P5FJ85_TREOI; NAC domain containing protein
STRING	XP_010093961.1	1e-142	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-110	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]