PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26059.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARR-B
Protein Properties Length: 594aa    MW: 65258.9 Da    PI: 6.6812
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26059.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.81.2e-28199252155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  PK26059.1 199 KPRVVWSVELHQQFVGAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 252
                79*******************.********************************8 PP
2Response_reg807.7e-27201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+   y ev+ +  +e al+ll+e++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a + ++ + + +  Ga 
     PK26059.1  20 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAEHALNLLRENKngYDVVISDVHMPDMDGFKLLERIGLEM-DLPVIMMSADDGKDVVMKGVTHGAC 114
                   89*********************.***************999999**********************6654.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
     PK26059.1 115 DYLIKPVRIEALKN 128
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363928.6E-1791592IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.5E-4217155No hitNo description
SuperFamilySSF521721.42E-3517138IPR011006CheY-like superfamily
SMARTSM004481.6E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.65719134IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.5E-2420128IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.33E-2921133No hitNo description
SuperFamilySSF466897.53E-20196256IPR009057Homeodomain-like
PROSITE profilePS512949.894196255IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-30198257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24199252IPR006447Myb domain, plants
PfamPF002494.7E-7201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MSTSTSGAGV SDQFPVGLRV LVVDDDPTCL MILEKMLRTC LYEVTKCNRA EHALNLLREN  60
KNGYDVVISD VHMPDMDGFK LLERIGLEMD LPVIMMSADD GKDVVMKGVT HGACDYLIKP  120
VRIEALKNIW QHVVRKKKNE WRGEIEQSGS VEEGDRLAKP SEEPDYSSSA NEGNWRSSKK  180
RKDDEEDGDD RDDSSTLKKP RVVWSVELHQ QFVGAVNQLG IDKAVPKKIL ELMNVPGLTR  240
ENVASHLQKY RLYLRRLSGQ HQTNMNNSFM SPQDPTFGPM TSLNGMDLQT LAVTGQLPAQ  300
SLATLQAAGL GRSTPKSGIP LPIVDQRNLF SFENPKLRFG EGQQQHLSNG KPLNLLHGIP  360
TNMEPKQLTN LHQSAQSLGM NMQVNPHGSQ NSPLLMQMAQ SQSRGPILNE SSSSHASRLP  420
SSVSQPMVTS GVLGRNGISD NGRGAGYNPV MQNSSMLNFP MNHSSELPGN SFPLGNPPSI  480
SGLASKGAFQ EDVNSEIKGS SGFMASYDIF NDLNHHKSND WDIQNVGLTF DASRQSNNLP  540
GSFDMVNQGF SPGQRNLSVR NHSNAGKTIF SMGENDHGTS HNINQNLNPH HGDX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-22198258464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101901.10.0two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2P5ERM50.0A0A2P5ERM5_TREOI; Two-component response regulator
STRINGXP_010101901.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39583458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]