PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK24688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 20456.9 Da PI: 8.3759 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.2 | 1.9e-45 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+lal+++e PK24688.1 32 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVQHRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAE 131 7**********************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.19 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-45 | 32 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
XSRVEWSSYI DRMKDISGSG GGGGRKQGAP SPCAACKLLR RRCAQDCVFA PYFPADEPQK 60 FANVHKVFGA SNVNKMLQEL PVQHRGDAVS SMVYEANARV RDPVYGCVGA ISSLQQQIDV 120 LQAQLALAQA EVVHLRVRQN ASLSSHGLSP ASPSNSGSPS PKLMGSQPNK PIFEMDMSVD 180 QGSFGETIWC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-48 | 28 | 133 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-48 | 28 | 133 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022777251.1 | 1e-102 | LOB domain-containing protein 4 isoform X1 | ||||
Swissprot | Q9SHE9 | 5e-77 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A314YWZ3 | 1e-100 | A0A314YWZ3_PRUYE; LOB domain-containing protein 4 | ||||
STRING | XP_009353911.1 | 1e-100 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 6e-72 | LOB domain-containing protein 4 |