PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21261.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NF-YA

Protein Properties

Length: 231aa MW: 25544.4 Da PI: 9.9844

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21261.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.9	6.8e-33	48	104	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+Rg+gGrF PK21261.1 48 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGTGGRF 104 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.2E-37	46	107	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.887	47	107	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.7E-28	49	104	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-24	50	72	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	52	72	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.4E-24	81	104	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
XHSIGCGSYA YSEPYFGGVM PFGAHALVQS HGLGMAASRM ALPLDITEEP VYVNAKQYHG 60 ILRRRQSRAK AELEKKLIKV RKPYLHESRH LHAMRRARGT GGRFLNTKKT NNKTAHNTAP 120 EMNTTTSSAA ADAAISTDPI ISLSTKPVSS DSSSDHYEST ELSMQKMHQT KTYHPNVNSN 180 SCYQPHQGFQ LSAYHSLSGG DHRIEEGDLI SGQHRERIMT NGTAHRALTI K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	48	112	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024027349.1	8e-98	nuclear transcription factor Y subunit A-1 isoform X1
Swissprot	Q945M9	3e-39	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A2P5BKE7	1e-118	A0A2P5BKE7_PARAD; Nuclear transcription factor Y subunit A
STRING	XP_010105454.1	3e-95	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4012	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	6e-40	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]