PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20816.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 493aa MW: 53605.4 Da PI: 8.7274 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.7 | 1.4e-15 | 315 | 360 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq PK20816.1 315 HNQSERKRRDKINQRMTTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 360 9************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-19 | 308 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.714 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-18 | 315 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-13 | 315 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.97E-17 | 315 | 364 | No hit | No description |
SMART | SM00353 | 2.1E-18 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MSQCVPSWDL DDSTSVPAAS RLSLRSRSNS TATDVPLLDY EVAELTWENG QITMHGLGPP 60 RVPNKNIGTN WPEKPRAGGT LESIVNQATR PSTLSLPYKP HGMPTAAARE ELVPWMKGHQ 120 GSAPPAAAQD NTATMDAQVP CSDPVKSRNN DRIKDSVVVP GFGTCHGQRG IVSYTQVASC 180 SGAVSTQEEI NNKTTGGFVV PDQKRESRTV VQTTARECPG DQSMSGTSAT FGTGNQPLRL 240 DSCDRDVGLG YPSTSMGSPE HVSSDKRSRK RTTADDHNSF CHSRSQRESG DDEDKKKGTG 300 KSSASTKRSR AAAIHNQSER KRRDKINQRM TTLQKLVPNS SKTDKASMLD EVIDYLKQLQ 360 AQVQMMNRMN MPAAMMLPMA MQQQLQMSMM NSLAGMGMGM GMTMDTMGRP NLPGINPILH 420 PNPFMPMNAW DHGSASAAAA DQSRLQPQLP PVIPDHLASF FACQPQSMTP EAYSRMAAMY 480 QQLHQPPTST SKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 318 | 323 | ERKRRD |
2 | 319 | 324 | RKRRDK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021677931.1 | 1e-161 | transcription factor UNE10-like | ||||
TrEMBL | A0A2P5C9N3 | 0.0 | A0A2P5C9N3_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | cassava4.1_007418m | 1e-154 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5676 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-70 | bHLH family protein |