PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20247.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Whirly | ||||||||
Protein Properties | Length: 239aa MW: 26275.3 Da PI: 10.2781 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 182.1 | 1e-56 | 60 | 195 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101 vyk+kaa++v +v+ptf++ldsg +++r G ++l++++a++erkydWek+q fals+tev++l++l+++++ce+fhdp++ +sn+G+vrk+l v+P++ PK20247.1 60 VYKGKAAFSVTPVLPTFTKLDSGLHVVDRGGCMMLKFTPAIGERKYDWEKRQLFALSPTEVGSLISLGPNDTCELFHDPSMLSSNAGQVRKSLTVKPHST 159 8*************************************************************************************************** PP Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 G G++++l+v n+++k+++++svP + aefav++ + PK20247.1 160 GGGYMISLTVVNNILKTKDYISVPFTTAEFAVVKAA 195 *********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 5.5E-67 | 56 | 217 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.57E-59 | 56 | 217 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.0E-54 | 60 | 194 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MKKLSRLLLT SRNQISRNIT NGKDGNLSNG LLLRTFTSHA GISTSGQNIN VKGFSAPYIV 60 YKGKAAFSVT PVLPTFTKLD SGLHVVDRGG CMMLKFTPAI GERKYDWEKR QLFALSPTEV 120 GSLISLGPND TCELFHDPSM LSSNAGQVRK SLTVKPHSTG GGYMISLTVV NNILKTKDYI 180 SVPFTTAEFA VVKAACSYAL PHIMGWDRVT EKVEKVNGGR RTPDIKFDRG QLMNSEWDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 2e-78 | 56 | 214 | 13 | 171 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 2e-78 | 56 | 214 | 13 | 171 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 2e-78 | 56 | 214 | 13 | 171 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 2e-78 | 56 | 214 | 13 | 171 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024031621.1 | 1e-119 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | Q8VYF7 | 2e-79 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2P5FBJ3 | 1e-129 | A0A2P5FBJ3_TREOI; Transcription factor | ||||
STRING | XP_010112062.1 | 1e-104 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 8e-82 | WHIRLY 2 |