PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20005.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YA
Protein Properties Length: 151aa    MW: 16930.7 Da    PI: 10.4398
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20005.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.24.9e-3276131258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 p+YVNaKQy++Il+RRq+Rak+e+++kl +++rkpylheSRh hAl+R RgsgGrF
  PK20005.1  76 GPIYVNAKQYHGILRRRQSRAKQEAQNKL-IRNRKPYLHESRHLHALNRVRGSGGRF 131
                69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-3573134IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.2574134IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-2777131IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-247799IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-24108131IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
XSEGAEDQMK PAFFLSKPDF MLHHSQLGGS HSLASVQYPY ADPYYGGFLT SYGPQALMVG  60
LQSTRVPLPL DLTDNGPIYV NAKQYHGILR RRQSRAKQEA QNKLIRNRKP YLHESRHLHA  120
LNRVRGSGGR FLSKKQLQHQ SSDSNSSSSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-2177136463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017193.13e-81nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_024017194.13e-81nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_024017195.12e-81nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ9LNP62e-43NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A2P5BH091e-84A0A2P5BH09_TREOI; Nuclear transcription factor Y subunit A
STRINGXP_010090113.13e-69(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.46e-45nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]