PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19587.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 273aa MW: 30931.1 Da PI: 6.428

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19587.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.6e-27	108	198	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY+eY+++vGF vr+ + ++s +++i++r++ C+k+g+++++ +k +++++r+ra++r gCka+++vk +k+gkw+vt++e++H+H+l PK19587.1 108 KFYDEYSRRVGFIVRIGTCRRSVVDKSIISRQLSCNKQGFSAKTADKvgHVRKHRPRAKSREGCKAMIRVKATKSGKWVVTSFEKDHTHPL 198 6***************************************9999988899999********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-24	108	199	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MVIVKLDEET GTTEPQAERV LNFHEERSAL EPCIVNLDQE TGTTEPQTGR VLDAHEEGSA 60 LGPCIVNFDE ETVTIEPQAE RILNAHEEGS ALEPCIGMEF ESEEAAKKFY DEYSRRVGFI 120 VRIGTCRRSV VDKSIISRQL SCNKQGFSAK TADKVGHVRK HRPRAKSREG CKAMIRVKAT 180 KSGKWVVTSF EKDHTHPLIV PDRRPIDSVD RRIEDLTMEL KHQDHLCELY RGLLLTFLKD 240 IDEQTETLST KIGLVVNNIR EVESGLKKPP QKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021685934.1	2e-86	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2P5CY21	9e-90	A0A2P5CY21_TREOI; FHY3/FAR1 family
STRING	VIT_00s0174g00130.t01	1e-78	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-55	FAR1 family protein