PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK18855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | AP2 | ||||||||
Protein Properties | Length: 125aa MW: 14439.8 Da PI: 9.9366 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 9.5e-17 | 42 | 102 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g+ PK18855.1 42 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWGH 102 57*******************999955656446*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-13 | 42 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-18 | 42 | 111 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-17 | 43 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.218 | 43 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-26 | 43 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 91 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MAKLSQKNNS ANVNTNNNGT HVPKVKRTRR SVPRDSPPQR SSIYRGVTRH RWTGRYEAHL 60 WDKNCWNESQ NKKGRQVYLG AYDDEEAAAH AYDLAALKYW GHDTILNFPL STYEKELKDM 120 EGVAX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245606.1 | 2e-67 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 4e-46 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0D2Q6I2 | 7e-65 | A0A0D2Q6I2_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JJ90 | 7e-65 | A0A1U8JJ90_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
TrEMBL | A0A2K2B973 | 6e-65 | A0A2K2B973_POPTR; Uncharacterized protein | ||||
STRING | Gorai.009G008800.1 | 1e-65 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 3e-43 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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