PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17549.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 122aa    MW: 13753.2 Da    PI: 9.2232
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17549.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.34.5e-37161082103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++lisw+++g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
     PK17549.1  16 FLTKTYQLVDDPAVDDLISWNDDGSSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLLRDIQ 103
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
     PK17549.1 104 RRKIS 108
                   **865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.9E-6012105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.7E-3913105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.6E-3316105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-211639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-215466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-216779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
XCSGGADSQR TLPTPFLTKT YQLVDDPAVD DLISWNDDGS SFIVWRPAEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKVV PDRWEFANDC FRRGEKGLLR DIQRRKISQT GTAAAATAAA  120
AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-29510519129Heat shock factor protein 1
5d5v_B1e-29510519129Heat shock factor protein 1
5d5v_D1e-29510519129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440567.15e-73heat stress transcription factor B-2b
RefseqXP_006477425.16e-73heat stress transcription factor B-2b
RefseqXP_006477426.16e-73heat stress transcription factor B-2b
SwissprotQ9T0D32e-65HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1R3KRH76e-73A0A1R3KRH7_9ROSI; Heat shock factor (HSF)-type, DNA-binding protein
STRINGXP_006477425.12e-72(Citrus sinensis)
STRINGXP_006440567.12e-72(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-66HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]