PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16953.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SBP
Protein Properties Length: 475aa    MW: 52364.8 Da    PI: 8.6295
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16953.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1322e-41180257178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +CqvegC+ dls+ak+yhr+h++Ce hsk+p v+v g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  PK16953.1 180 RCQVEGCNLDLSSAKDYHRKHRICENHSKSPRVIVGGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQP 257
                6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-34176242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.009178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-39179260IPR004333Transcription factor, SBP-box
PfamPF031104.0E-32181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEWNSKPSLL WDLENLFEFD TKATENPKKL QLTGCNFEGD RGISSGSLHS PGDGGGSAGS  60
GSDLGHASSR SSISASINSS SIGESKTSKF TLDGFEPFSN ELMSKNEANK AQQHGSSPTP  120
DISTGSGEAL LSLKLGKRMY FKDICSENNV KHSSHSEVSP SAATVKRNKS SCQANLSPPR  180
CQVEGCNLDL SSAKDYHRKH RICENHSKSP RVIVGGVERR FCQQCSRFHG LSEFDEKKRS  240
CRRRLSDHNA RRRKPQPEAV RLNPARLSSL YDETQKMSLV FDQRLYSRHA NVAWDGPDSS  300
KFGHTREYFS RPAKSGAAAG QLLLPNNGQM PNSITMLYQD PNRLTPNKGT ATEVHHPGFE  360
ETAISSDLNT SQDLHRALSL LSTSSWGSRE TKPVSLDTLN NTTNNSSMVQ NAVHPISQGL  420
PIASEYWQTQ HHQPTIDAAP SPLSHHQRSN GSSQFQDLHL FKAPTESGFY SYQFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261812541184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236253KKRSCRRRLSDHNARRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102696.10.0squamosa promoter-binding-like protein 2
RefseqXP_024025420.10.0squamosa promoter-binding-like protein 2
RefseqXP_024025421.10.0squamosa promoter-binding-like protein 2
RefseqXP_024025422.10.0squamosa promoter-binding-like protein 2
TrEMBLA0A2P5C1U90.0A0A2P5C1U9_TREOI; SBP-box transcription factor
STRINGXP_010102696.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-64squamosa promoter binding protein-like 2