PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK15535.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 249aa MW: 27876.3 Da PI: 8.1735 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.9e-19 | 82 | 135 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k PK15535.1 82 KKKRLTTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 135 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.5 | 3.3e-37 | 82 | 172 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl+++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++d +++e+++L++ev++L+ l+ PK15535.1 82 KKKRLTTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQELDVMSKEKQKLQEEVTKLKGMLR 172 9*************************************************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 56 | 138 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.78E-19 | 64 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 77 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-16 | 80 | 141 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-16 | 82 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.36E-15 | 82 | 138 | No hit | No description |
PRINTS | PR00031 | 8.4E-5 | 108 | 117 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 112 | 135 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.4E-5 | 117 | 133 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MDWNSNLRLV SRPECSYGFL YNYNYDQYQG MDMKHHQAAL MAETTQGLGL LGVPSMEKMN 60 GGGSSGNTGN SSYGMMMSNQ DKKKRLTTDQ LESLERSFQE EIKLDPDRKM KLSRDLGLQP 120 RQIAVWFQNR RARWKAKQLE RLYDALKQEL DVMSKEKQKL QEEVTKLKGM LREQGGGWKQ 180 VSTTGGYTEI SGEETVESTS AGGIRSSSKS LGTNPLGGGG SGGGECSHHI LNVEEYNPVS 240 PPYWLPSYP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 129 | 137 | RRARWKAKQ |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898574.1 | 1e-106 | putative homeobox-leucine zipper protein ATHB-51 isoform X1 | ||||
TrEMBL | A0A2P5FVQ0 | 1e-119 | A0A2P5FVQ0_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_008241330.1 | 1e-101 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 6e-54 | homeobox 51 |