PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14983.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 372aa    MW: 41990.7 Da    PI: 10.3177
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14983.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.9e-31306363359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ed +++++tYegeHnh+
  PK14983.1 306 DDFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDSSMLIVTYEGEHNHP 363
                99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.6E-18257302IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.5E-33292364IPR003657WRKY domain
PROSITE profilePS5081129.907299365IPR003657WRKY domain
SuperFamilySSF1182907.06E-27302364IPR003657WRKY domain
SMARTSM007741.8E-38304364IPR003657WRKY domain
PfamPF031067.1E-27306363IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDEVEEANKV AVQSCLRVLT LLTQPQDQIQ RKRLFVETEE AVFRFKKVGS LLSSCVGHAR  60
VRKPKKFPIP LPQNLLLDNP NCRTKTTTTT EHPSPKTLLF LQSTTFPPEN PHQDMGSNVK  120
SSLCLGNTSL ELSSSGKTPI QQVNPTPYRL IQQQQQLQQQ QLQHHQQQQQ QQQHKLLFHQ  180
HQQQMKHQAE MMFRKSNSSG MSLNFDNSSC TPTMSSTRSF ISSLSMDGSV ANMDGNSFHL  240
IGAPPPTRSL DQNSQHKRKC SGRGDDGSVK CGSSGRCHCS KKRKHRVKRS IKVPAISNKL  300
ADIPPDDFSW RKYGQKPIKG SPHPRGYYKC SSMRGCPARK HVERCLEDSS MLIVTYEGEH  360
NHPRIQSQSA NT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-213003621071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100083.10.0probable WRKY transcription factor 21
SwissprotO043361e-122WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2P5AN690.0A0A2P5AN69_PARAD; WRKY domain containing protein
STRINGXP_010100083.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.19e-96WRKY DNA-binding protein 21