PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK14534.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bZIP

Protein Properties

Length: 353aa MW: 40400.6 Da PI: 6.5294

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14534.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3.1e-11	70	109	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k++rr+++NReAAr+sR+RKka++++Le +L + + PK14534.1 70 NKVQRRLAQNREAARKSRLRKKAYVQQLESSRMKLAQLEQ 109 599**************************86555554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-7	67	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.404	69	113	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.2E-9	71	115	No hit	No description
Pfam	PF00170	2.5E-8	71	111	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.22E-7	71	112	No hit	No description
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-27	155	229	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MGIYEPFRQV PMAMWKNSFE NDNNNILYTP NSTIVEEVVP SQETKLEFIS HESVGPSEND 60 QEAHKFTDDN KVQRRLAQNR EAARKSRLRK KAYVQQLESS RMKLAQLEQE LERSRKQGAA 120 FIGSNTNSSS SLNSEMVAFD NKYGYWVEEL NRQNGELRNA LQARVASDVE LGMLVENGLN 180 HYYNLFQMKE EAAKSDIFYL MSGIWRTPAE RFFLWIGGFR PSDLLKVVMP HIEPMNDQQV 240 AGVNNLRQSS QQAEDALSQG IDKLHQNLAF NMAADPITEA AYESIMADAI EKLEALEIFV 300 NQADHLRLQT MRQMARILRP NQAARALLAL GDYFHRLRAL SSLWSARPRH SSA

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MGIYEPFRQV PMAMWKNSFE NDNNNILYTP NSTIVEEVVP SQETKLEFIS HESVGPSEND  60
QEAHKFTDDN KVQRRLAQNR EAARKSRLRK KAYVQQLESS RMKLAQLEQE LERSRKQGAA  120
FIGSNTNSSS SLNSEMVAFD NKYGYWVEEL NRQNGELRNA LQARVASDVE LGMLVENGLN  180
HYYNLFQMKE EAAKSDIFYL MSGIWRTPAE RFFLWIGGFR PSDLLKVVMP HIEPMNDQQV  240
AGVNNLRQSS QQAEDALSQG IDKLHQNLAF NMAADPITEA AYESIMADAI EKLEALEIFV  300
NQADHLRLQT MRQMARILRP NQAARALLAL GDYFHRLRAL SSLWSARPRH SSA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105854.2	1e-179	transcription factor TGA7 isoform X2
Refseq	XP_024027637.1	1e-179	transcription factor TGA7 isoform X2
Refseq	XP_024027638.1	1e-179	transcription factor TGA7 isoform X2
Refseq	XP_024027639.1	1e-178	transcription factor TGA7 isoform X3
Swissprot	Q39162	1e-132	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A2P5G221	0.0	A0A2P5G221_TREOI; Basic-leucine zipper transcription factor
STRING	XP_010105854.1	1e-178	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-131	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]