PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12151.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HB-other
Protein Properties Length: 265aa    MW: 30354.5 Da    PI: 5.1396
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12151.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94e-092082422155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yp+++++  LA+ +gL+++q+ +WF N+R ++
  PK12151.1 208 KWPYPTEADKNALAETTGLDQKQINNWFINQRKRH 242
                669*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.8E-212266IPR005540KNOX1
PfamPF037901.1E-202465IPR005540KNOX1
SMARTSM012562.8E-2673124IPR005541KNOX2
PfamPF037911.2E-2477123IPR005541KNOX2
PROSITE profilePS5007112.762182245IPR001356Homeobox domain
SuperFamilySSF466893.04E-19183256IPR009057Homeodomain-like
SMARTSM003891.6E-12184249IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-27187246IPR009057Homeodomain-like
CDDcd000861.95E-11191246No hitNo description
PfamPF059202.7E-17202241IPR008422Homeobox KN domain
PROSITE patternPS000270220243IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
XASAAISEAA VSFQRSEEDV SNLIKTKISS HPTYPKLLQA YIDCQKVGAP PEIASFLEEI  60
RRKNECYKRD SIISTCLGAD PELDEFMETY CEMLVKYKSD LARPFDEATT FLNKIEIQLS  120
NLCSSTAATN TRPLSDEGGA SSEEELSGGE VEGGGQQQQQ ECQLRSEDRD LKDKLLRXKL  180
EFSKKKKKGK LPREARQTLL DWWNLHYKWP YPTEADKNAL AETTGLDQKQ INNWFINQRK  240
RHWKPSENMQ FAVMDNLSGQ FYRDD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023903.11e-150homeobox protein knotted-1-like 6
SwissprotQ84JS61e-120KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2P5FMJ61e-157A0A2P5FMJ6_TREOI; Knotted-like homeobox transcription factor
STRINGXP_010100424.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.19e-91KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]