PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11988.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 342aa    MW: 39117.8 Da    PI: 7.5442
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11988.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35331252103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sw +++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF++++F+kg k+ll++i+
     PK11988.1  33 FLTKTYQLVDDPVTDDIVSWGDDQTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFRKGAKHLLSEIH 120
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
     PK11988.1 121 RRKAS 125
                   **976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3724116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.6E-5729122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-3330122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3133122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-193356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAFAVESNNN IMRCSEENMV FTVESQKAVP APFLTKTYQL VDDPVTDDIV SWGDDQTTFV  60
VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YGFKKIVADR WEFANEYFRK GAKHLLSEIH  120
RRKASQQQQQ QYYQTINNHH LHLGDQQQQQ QRTHFPHLTF QQPDYHDTTF GWSNISPTTI  180
TTTNKFSEIP SPLLESDHHN NPKPYVDDHN ILTVLTQDNQ RLRRKNFMLL SELTHMKTLY  240
NDIIYFIQNH VEPVVPNAVG TSGSGILKIM ELGSSSLSPV RINNHGFDGK GKCSGSMDFG  300
KSCGALTTHE EKNGSSGVKL FGVSLLSGRK RVHPETTTDL SI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-212912517123Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088963.21e-124heat stress transcription factor B-4b
TrEMBLA0A2P5DR001e-150A0A2P5DR00_PARAD; Heat shock transcription factor
STRINGXP_010088963.11e-120(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-86heat shock transcription factor B4