PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11841.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 662aa    MW: 73734.3 Da    PI: 6.9847
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11841.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-15312371155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+ ++ a++k++g
  PK11841.1 312 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARSYDLAALKYWG 371
                78*******************988886678446*************************98 PP
2AP2461.3e-14416465355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PK11841.1 416 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 465
                9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.50E-21312379No hitNo description
SuperFamilySSF541719.81E-16312381IPR016177DNA-binding domain
PfamPF008474.5E-12312371IPR001471AP2/ERF domain
PROSITE profilePS5103218.9313379IPR001471AP2/ERF domain
SMARTSM003801.5E-28313385IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-15313380IPR001471AP2/ERF domain
PRINTSPR003675.1E-6314325IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-17414474IPR016177DNA-binding domain
CDDcd000181.44E-24414475No hitNo description
SMARTSM003806.0E-33415479IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-18415473IPR001471AP2/ERF domain
PROSITE profilePS5103219.203415473IPR001471AP2/ERF domain
PfamPF008471.9E-9416465IPR001471AP2/ERF domain
PRINTSPR003675.1E-6455475IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MEAPSNPHNH HHNNQTQQSS SSSAPTSYFH SSPQLNYGLY YGVEGENNGL YSPLSVMPLK  60
SDGSLCIMEA LTRSQPQATM VTTSTPKLED FFGSGTMGSH HYESNDREVM ALSLDNSMFF  120
NQNPEHEEPN NHHHQNFLNQ LQQQQQQQQQ QQQQSSRHQD HQAQQIQAQQ QYSYYSGLRS  180
HDIAAAAASA DCNLQLPTMA DNGISEMKNW VSRNYSGNHG LEQKMIGGCM ADNGGESGSI  240
NGMAYGDLQS LSLSMSPGSQ SSCVTGSQKQ QQISPPVTDC VAIDTKKRGP EKVDQKQIVH  300
RKSLDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ SRKGRQVYLG GYDMEEKAAR  360
SYDLAALKYW GPSTHINFPL ENYHKELEEM KNMTRQEYVA HLRRKSSGFS RGASMYRGVT  420
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDITRYDVD  480
RIMASNTLLA GELAKRTKDV GSAAIEAANQ NSASSSINEE AITPKNNEGE SDWKMALYHS  540
SSTQQQQHQL VQKPLSMDNS YKGESYSVVA PENMIHQLEV EDSAKMGTHM SNASSLVTSL  600
SSSREGSPDK SSLPGLLYGV PPSVSKFFTN PANDVSSWIP TTQQRSALSM PHMPIFAAWT  660
DT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868187.10.0AP2-like ethylene-responsive transcription factor ANT
RefseqXP_015890374.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-146CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2P5AUX30.0A0A2P5AUX3_PARAD; AP2/ERF transcription factor
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-131AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]