PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK11632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NF-YC | ||||||||
Protein Properties | Length: 146aa MW: 16684.2 Da PI: 10.1434 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 47 | 5.7e-15 | 37 | 128 | 8 | 99 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++ e+++d k +++P+ ri++i+++d+ +is ea l+ ka e fi ++ + a + ++++l ++++v++ + +dfl d vp++ PK11632.1 37 EEPEESEDAKMNKFPMERIRRIVRSDDPDMRISNEAVFLVNKATEKFIEKFCGDAHACAIKDRKKALAYKHLSSVVSKRKRYDFLSDFVPEK 128 4578999******************999999**********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.33E-18 | 43 | 127 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-16 | 49 | 112 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.3E-23 | 50 | 127 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
PEVENGSVLI TKNLTTSTPT KSSNGKQKKQ KKRERKEEPE ESEDAKMNKF PMERIRRIVR 60 SDDPDMRISN EAVFLVNKAT EKFIEKFCGD AHACAIKDRK KALAYKHLSS VVSKRKRYDF 120 LSDFVPEKVK AVDALAERKL LEAEAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 35 | KKQKKRERK |
2 | 98 | 116 | RKKALAYKHLSSVVSKRKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008358413.2 | 1e-53 | uncharacterized protein LOC103422153 | ||||
TrEMBL | A0A2P5DEY0 | 5e-68 | A0A2P5DEY0_PARAD; Transcription initiation factor | ||||
STRING | XP_008358413.1 | 3e-53 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 8e-32 | nuclear factor Y, subunit C10 |