PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK11564.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 17556.2 Da PI: 8.2299 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 147.2 | 4.4e-46 | 25 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpee+r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la +++e PK11564.1 25 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEEQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAIAQAE 124 7**********************************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.446 | 24 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-45 | 25 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
XYNIMKENSN IGSTGNGRKQ GGMSPCAACK LLRRRCAQDC VFAPYFPADE PHKFASVHKV 60 FGASNVNKML QELPEEQRSD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDALQTQLAI 120 AQAEVVHMRM TQFSPTSNHN HHHNNNNYNN NNNNNSNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-48 | 21 | 126 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-48 | 21 | 126 | 7 | 112 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424349.1 | 7e-83 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 1e-63 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0S3SK41 | 2e-81 | A0A0S3SK41_PHAAN; Uncharacterized protein | ||||
STRING | XP_004294159.1 | 7e-82 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-65 | LOB domain-containing protein 4 |