PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09586.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 352aa    MW: 39330.1 Da    PI: 8.3742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09586.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18135185256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  PK09586.1 135 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 185
                59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.40E-15134194No hitNo description
SuperFamilySSF541713.86E-22135192IPR016177DNA-binding domain
PROSITE profilePS5103223.235135192IPR001471AP2/ERF domain
SMARTSM003805.9E-35135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-31135193IPR001471AP2/ERF domain
PRINTSPR003676.3E-10136147IPR001471AP2/ERF domain
PfamPF008471.5E-12136185IPR001471AP2/ERF domain
PRINTSPR003676.3E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
XIFLENKVKE VAIIMDRMLD NHSALSFSEG MEIRSSLSNL ILAGGTNTLD SIFSHCCGTT  60
TTTTPSCSTA TAATANPIFE PLGSSVYHRQ RDLVQKFSSG NKANFNAYSS FYQTNPIQDS  120
VHVSNFMAVP FKKKLYRGVR QRHWGKWVAE IRLPQNRMRV WLGTYETAEA AAYAYDRAAY  180
KLRGEYARLN FPNLKDPRIL GFEDWTKLNT LKNSVDAKIQ AICQKVKKNK AKKSMMKKMK  240
NKTNNSSRSS STTTEHDFSG EDSKGSDCSK ATATTLDSSY SSFSPLFFGD NLDQEIVSPA  300
VSEDGFWKCE NSPSSVLTQC PVSVSEDSMF EDCSLARIPS FDPELIWEVL AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21132192263ATERF1
3gcc_A2e-21132192263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086732.11e-117ethylene-responsive transcription factor ERF061
SwissprotQ9C7W24e-68ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2P5B8V41e-140A0A2P5B8V4_PARAD; AP2/ERF transcription factor
STRINGXP_010096822.11e-113(Morus notabilis)
STRINGXP_010113146.11e-113(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-59ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]