PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07183.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 496aa    MW: 54937.2 Da    PI: 6.7967
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07183.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.7e-17150199155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PK07183.1 150 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 199
                78*******************......55***********************9997 PP
2AP242.31.8e-13242292155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +    +  k+++lg f+++ eAa+a+++a+ k +g
  PK07183.1 242 SKYRGVTLHK-CGRWEARMGQF----MGkKYIYLGLFDSEIEAARAYDKAAIKCNG 292
                89********.7******5554....224**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16150209IPR016177DNA-binding domain
PfamPF008471.2E-8150199IPR001471AP2/ERF domain
CDDcd000184.07E-11151209No hitNo description
PROSITE profilePS5103217.543151207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-17151207IPR001471AP2/ERF domain
SMARTSM003802.6E-31151213IPR001471AP2/ERF domain
PfamPF008473.3E-9242292IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17242301IPR016177DNA-binding domain
CDDcd000184.20E-25242300No hitNo description
PROSITE profilePS5103215.422243300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-15243300IPR001471AP2/ERF domain
SMARTSM003802.7E-32243306IPR001471AP2/ERF domain
PRINTSPR003677.8E-6244255IPR001471AP2/ERF domain
PRINTSPR003677.8E-6282302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MLDLNLNVLL SPDSAASDSV DNKLLESSGS FNSSSNLTTA DDDSSSNLNA TASLFGYSFD  60
ILNNHRNDEV YVSTTNDHDV HRSCFAQTIE LFPVANSINN NNRSSVPRRQ WLGLSCSEGT  120
YGGPAEQGSA PQQQNKQVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF  180
DTAHAAARAY DRAAVKFRGL EADINFNISD YDEDIKHMSN FSKEEFVHIL RRQSTGFSRG  240
SSKYRGVTLH KCGRWEARMG QFMGKKYIYL GLFDSEIEAA RAYDKAAIKC NGREAVTNFD  300
PNSYDGEIMM SEVDHDGFTG SNQNLDLNLG IAPLSASNAE ADDAYFQQGY SDFPVLKRDK  360
SENFATVGAT LSYHGSQRYE DHHSSSGINS NFFANNRERE IEKGVDVNSF VHNWAAWPIQ  420
GLNGRAAVLP PPVPLFSTAA SSGFPSSTTS VSPPSLAATT TQPHFPNNSS NILHHHFIPP  480
SSITTTNGLP HFYYRT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239108.11e-157PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ8H4431e-103AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2P5A7F51e-168A0A2P5A7F5_PARAD; AP2/ERF transcription factor
STRINGXP_008239108.11e-157(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-98AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]